PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G253600.1.p
Common NameLOC101763706, SETIT_016578mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 666aa    MW: 71649.4 Da    PI: 5.596
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G253600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.21.3e-2994178187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+++e+laLi++r+em+ ++r++ lk+plWe+v++k++  g++rs+k+Ckek+en+ k+y+++k+ + +r++++s  +++f+qlea
  Seita.1G253600.1.p  94 RWPREETLALIRIRTEMDADFRNAPLKAPLWEDVARKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGKS--YRFFSQLEA 178
                         8*********************************************************************866665..*******85 PP
2trihelix108.35.2e-34411496187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k+ev+aLi++r+e++e++ +  +k+plWe++++ mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a
  Seita.1G253600.1.p 411 RWPKEEVQALIQLRTEKDEQYHDVVAKGPLWEDIAAGMRRIGYHRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 496
                         8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003291153IPR001005SANT/Myb domain
PfamPF138371.9E-2093179No hitNo description
PROSITE profilePS500906.99294151IPR017877Myb-like domain
CDDcd122033.73E-2794158No hitNo description
SMARTSM007171.5E-4408470IPR001005SANT/Myb domain
PROSITE profilePS500907.724410468IPR017877Myb-like domain
CDDcd122034.00E-27410475No hitNo description
Gene3DG3DSA:1.10.10.602.2E-4411467IPR009057Homeodomain-like
SuperFamilySSF466897.69E-5411496IPR009057Homeodomain-like
PfamPF138371.1E-22411497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MLHHHGGAGS PYTAPPTAGT APFPPTPTGL VSATAIPPPP MQLQPAGTTP SANFEELPAG  60
GSGAGAVANL QEEDVPADVV GGSGVGASGS GGHRWPREET LALIRIRTEM DADFRNAPLK  120
APLWEDVARK LAGLGYHRSA KKCKEKFENV DKYYRRTKDA RAGRQDGKSY RFFSQLEALH  180
AAAQRQQQAT GMATVQADHQ PLRTMAAWTA TPATQQLGPP GGSALPDLSF SSMSGSESDS  240
ESDDDLDDGV LEAGLGKGES GGDDREMMAI FEGMMKQVTE KQDAMQRVFL ETLERWEAER  300
TAREEAWRRQ EVARMNHERE QLARERAAAA SRDAALIAFL QRIGGGQQQG EPVRLPPPIA  360
VAMPVPAPMP DRTPPSPRHD ASLQPVPAPP KPEEARAWAG GEGSGSSLPS RWPKEEVQAL  420
IQLRTEKDEQ YHDVVAKGPL WEDIAAGMRR IGYHRSAKRC KEKWENINKY YKKVKESNKR  480
RPEDSKTCPY FHQLDAMYRK KRFAGGGIST APGAYTAAVA VTVLENPNLN PRELEGKSSH  540
DAGKSKNDGQ GNVQGPPGNN GETAPATTVP DDGDKNKRAE DNMKETDVQL LQQQFGADET  600
ESDDNDMGGD YTEEGGNDED KTKYKTSFQK PNVIGSSGDA TAPPATAAAT ANSAGPTSST  660
FLAVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G253600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953287.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_012699251.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLK3YQN40.0K3YQN4_SETIT; Uncharacterized protein
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-43Trihelix family protein