PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G251700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 137aa MW: 14370 Da PI: 10.0046 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 68.4 | 2.7e-21 | 45 | 90 | 11 | 56 |
YABBY 11 CyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql 56 Cyv+Cn C+tilav vP +slfk+vtvrCGhC+s+lsvnl+ Seita.1G251700.1.p 45 CYVHCNCCETILAVGVPCSSLFKTVTVRCGHCASMLSVNLHGLLLP 90 ***************************************9987633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-22 | 45 | 106 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MSSKSIGLHS IVEIYRDVVL VLLVVGRHPA GPPRAVPHRA ALLPCYVHCN CCETILAVGV 60 PCSSLFKTVT VRCGHCASML SVNLHGLLLP PAAQVPSFLM NQASANVSAA ATAAAAATCR 120 PRRCRKRSRL CSRSPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G251700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960773 | 2e-73 | EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684397.1 | 3e-47 | protein YABBY 4-like | ||||
TrEMBL | A0A368PPH8 | 2e-90 | A0A368PPH8_SETIT; Uncharacterized protein | ||||
STRING | Si018146m | 1e-25 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP58189 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 6e-17 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G251700.1.p |