PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G250900.1.p
Common NameLOC101786761, SETIT_017934mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 298aa    MW: 32355.8 Da    PI: 8.1242
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G250900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-181562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+llvd+++  G g+W++ ++  g++R++k+c++rw +yl
  Seita.1G250900.1.p 15 KGPWTPEEDKLLVDYIQANGHGSWRLLPKLAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding51.13.1e-1668113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++ +v++++  G++ W+ Ia+ ++ gRt++++k++w+++l
  Seita.1G250900.1.p  68 RGPFSPEEQKSIVQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0191062IPR017930Myb domain
SuperFamilySSF466893.07E-3112109IPR009057Homeodomain-like
SMARTSM007173.7E-141464IPR001005SANT/Myb domain
PfamPF002491.9E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-231669IPR009057Homeodomain-like
CDDcd001678.13E-101762No hitNo description
PROSITE profilePS5129426.02863117IPR017930Myb domain
SMARTSM007175.9E-1567115IPR001005SANT/Myb domain
PfamPF002491.9E-1468113IPR001005SANT/Myb domain
CDDcd001672.95E-1070113No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRAPCCDRT KGLKKGPWTP EEDKLLVDYI QANGHGSWRL LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGP FSPEEQKSIV QLHAIVGNKW SMIAAQLPGR TDNEIKNYWN THLKKQLRRM  120
GLDEPPPGPA AGCPAARHMA QWETARLEAE ARLSLLASSC SSGATATTAT TSVSSSSTFA  180
AGAEKASSKP ADIFLRLWSS DIGDSFRRKT AAPALPAPPV KRKDDVVMIK QEALALPAPG  240
DDSSAASNET EVAEALEEYQ MFLDFAGEEL GLFHGRYGGF SLFPPLEVLE ASLDTAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G250900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9494090.0EU949409.1 Zea mays clone 406724 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953258.10.0transcription factor MYB41
SwissprotQ9M2D92e-87MYB17_ARATH; Transcription factor MYB17
TrEMBLK3YUI80.0K3YUI8_SETIT; Uncharacterized protein
STRINGSi017934m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-75myb domain protein 17