PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.1G239100.1.p | ||||||||
Common Name | LOC101776935, SETIT_018001mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 31378.8 Da PI: 6.4239 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.5 | 4.4e-52 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nrat+sgyWkatgkd+e Seita.1G239100.1.p 10 LPPGFRFYPSDEELVCHYLLKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTAREWYFFSFRDRKYATGSRTNRATRSGYWKATGKDRE 99 79*************************998.88***************87788899*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s +g++vg++ktLvfy+grap+g+k+ Wvmhe+rl Seita.1G239100.1.p 100 VRS-GGAVVGMRKTLVFYRGRAPNGVKSGWVMHEFRL 135 ***.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-62 | 7 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.973 | 10 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-28 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MALREIESTL PPGFRFYPSD EELVCHYLLK KVANERIAQG TLVEVDLHAR EPWELPEVAK 60 LTAREWYFFS FRDRKYATGS RTNRATRSGY WKATGKDREV RSGGAVVGMR KTLVFYRGRA 120 PNGVKSGWVM HEFRLDTPHS PPREDWVLCR VFQKTRGDGD GQDGDSSSSP PAFAGSSSRV 180 MPESDHYSAS GGYCYYGHTA LAPQQEAVAV LPQYYYGGGG TAADHHHGFQ RDDAGALPGF 240 GFGAREVVAG GDEYGFAAGY FDMGGGFEDV ASLGVGGGME FPQAWS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-52 | 5 | 154 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.1G239100.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT038122 | 0.0 | BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953145.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLJ2 | 2e-62 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | K3YUQ5 | 0.0 | K3YUQ5_SETIT; Uncharacterized protein | ||||
STRING | Si018001m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-76 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.1G239100.1.p |
Entrez Gene | 101776935 |
Publications ? help Back to Top | |||
---|---|---|---|
|