PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G228800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 335aa    MW: 35040.1 Da    PI: 4.9392
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G228800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-072663438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                        r C+ +  ++++l+C+ ++ +lC+ C    H g    H 
  Seita.1G228800.1.p 26 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 63
                        68**************************999.4466675 PP
2zf-B_box24.55.7e-0865110342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          + C+ +e+ ++   C+ +   lC+ C   +H+       H++vp+
  Seita.1G228800.1.p  65 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERVPV 110
                         679*****************************66899999999986 PP
3CCT70.35e-24256298143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+
  Seita.1G228800.1.p 256 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKR 298
                         9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6842367IPR000315B-box-type zinc finger
SMARTSM003365.2E-52367IPR000315B-box-type zinc finger
PfamPF006438.3E-62663IPR000315B-box-type zinc finger
CDDcd000215.68E-72667No hitNo description
PROSITE profilePS5011910.50963110IPR000315B-box-type zinc finger
PfamPF006433.2E-665110IPR000315B-box-type zinc finger
SMARTSM003361.2E-968110IPR000315B-box-type zinc finger
PROSITE profilePS5101716.916256298IPR010402CCT domain
PfamPF062033.0E-18256298IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDAAAELELE LEQKPAVGYW GVVGARPCDA CAAEPARLHC RADGAFLCPG CDARAHGAGS  60
RHARVWLCEV CEHAPAAVTC RADAAALCAA CDADIHSANP LARRHERVPV APFFGALADA  120
PQPFPSPAFA AAAAAGAHAQ GEVGADDDGS NEAEAASWLL PEPDNSHEDS AAATDAFFAD  180
SDGYLGVDLD FARSMDGIKA IGVPVAPPEL DIAAGGFFYP DHSMNHSVSS SEVAVVPDAL  240
AAGGPAVPVV SRGKEREARL MRYREKRKNR RFDKTIRYAS RKAYAETRPR IKGRFAKRCS  300
AEAEDEALEH EEGACFSPAV SAPAASDGVV PSFC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G228800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9562390.0EU956239.1 Zea mays clone 1559496 CONSTANS-like protein CO5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953058.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A368PN810.0A0A368PN81_SETIT; Uncharacterized protein
STRINGSb04g025660.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-39CONSTANS-like 3