PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G225000.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

DBB

Protein Properties

Length: 260aa MW: 27746.1 Da PI: 4.6031

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G225000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.1	1.5e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e ++ C ++ lC+ C +e+H H++ p Seita.1G225000.1.p 4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46 7****99*******************6678888888877 PP
2	zf-B_box	27	9.3e-09	54	85	3	34
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++ek + +fC +++ l+C+dC + +H Seita.1G225000.1.p 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85 689**************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.011	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.22E-6	3	47	No hit	No description
Pfam	PF00643	1.2E-5	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	2.1E-9	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	4.6E-14	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.902	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	54	95	IPR000315	B-box-type zinc finger
CDD	cd00021	5.41E-7	55	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MKIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLEAL SARLPRCDVC 60 QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGAASTC SAGGCDAHDS 120 DHHAPPKATV EPPPQPAVSA EAQQVPSPPQ FLPQGWAVDE LLQFSDYESG DKLQKESPLG 180 FKELEWFADI DLFHDQAAPK AGRTLAEVPE LFGSQAASDA AYYRPSKAAG AGAGVRQSKK 240 ARIEVTDDEE DYLIVPDLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:23624715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G225000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039586	0.0	BT039586.1 Zea mays full-length cDNA clone ZM_BFc0031F03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953029.1	0.0	B-box zinc finger protein 25
Swissprot	Q9SID1	1e-77	BBX25_ARATH; B-box zinc finger protein 25
TrEMBL	A0A368PNF3	0.0	A0A368PNF3_SETIT; Uncharacterized protein
STRING	Sb04g025400.1	1e-157	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3202	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	6e-80	salt tolerance homologue

Link Out ? help Back to Top
Phytozome	Seita.1G225000.1.p

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]