PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G223700.2.p

Common Name

SETIT_017194mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 223aa MW: 23757.8 Da PI: 9.4723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G223700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	4.9e-13	158	203	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq Seita.1G223700.2.p 158 SIAERERRTRISEKLRKLQELVPHM----DKQTSTADMLDLAVEHIKGLQ 203 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.405	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.19E-15	155	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.65E-13	156	207	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.6E-15	157	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-10	158	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-13	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MIFNYTRLVG LNYAGYPGSK GAGGSGGAEA SGSGRKMKPS QFNFTRPQPG GAAGHLSQIS 60 EDGAFPPGLV GDRAGESSSS GGGAAAARSF SGGFSIVGPW EESRDIIATL GAYDSQFSGA 120 MAGTALEMAG MDRYMQLQPD QMPFKVRAKR GCATHPRSIA ERERRTRISE KLRKLQELVP 180 HMDKQTSTAD MLDLAVEHIK GLQSELQALK HEQEKCTCCR KR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G223700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954725	1e-123	EU954725.1 Zea mays clone 1479278 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953019.1	1e-150	transcription factor bHLH128
Swissprot	Q8H102	2e-47	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A368PNF0	1e-162	A0A368PNF0_SETIT; Uncharacterized protein
STRING	Si017194m	1e-147	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	3e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.1G223700.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]