PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G223700.1.p | ||||||||
Common Name | SETIT_017194mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 311aa MW: 32592.1 Da PI: 8.9402 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.4e-13 | 246 | 291 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq Seita.1G223700.1.p 246 SIAERERRTRISEKLRKLQELVPHM----DKQTSTADMLDLAVEHIKGLQ 291 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.405 | 240 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-15 | 243 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.26E-12 | 244 | 295 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 245 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-13 | 246 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-10 | 246 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MRRFLPARGG GGEPSSSSSS GGHQRRELAG EAGLRYDGGG DISLGHGHDA GGGHRRHHHH 60 QLGGGGGGQA AERQQQDDGS MDMLARHSSS PAGFFSNLVV DNGYPGSKGA GGSGGAEASG 120 SGRKMKPSQF NFTRPQPGGA AGHLSQISED GAFPPGLVGD RAGESSSSGG GAAAARSFSG 180 GFSIVGPWEE SRDIIATLGA YDSQFSGAMA GTALEMAGMD RYMQLQPDQM PFKVRAKRGC 240 ATHPRSIAER ERRTRISEKL RKLQELVPHM DKQTSTADML DLAVEHIKGL QSELQALKHE 300 QEKCTCCRKR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G223700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954725 | 1e-123 | EU954725.1 Zea mays clone 1479278 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953019.1 | 0.0 | transcription factor bHLH128 | ||||
Swissprot | Q8H102 | 1e-50 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A368PP15 | 0.0 | A0A368PP15_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YSF0 | 0.0 | K3YSF0_SETIT; Uncharacterized protein | ||||
STRING | Si017194m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11531 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 3e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G223700.1.p |
Publications ? help Back to Top | |||
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