PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G217800.2.p | ||||||||
Common Name | LOC101770994, SETIT_017393mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 404aa MW: 45110.7 Da PI: 5.3106 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.9 | 6.1e-30 | 57 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+P+d el+ e+L++k+ ++++ i++ +i++++P++Lp +k++ ++ +fF++ +k+y +g+rk+r Seita.1G217800.2.p 57 LPAGVKFDPSDLELL-EHLEEKIGLGGsrphvlIDEFIPiIDNDeGICYSHPENLP-GMKTDGSNAHFFHRVSKAYGRGQRKRRRviscss 145 799************.99****876665677664443442554447**********.7788899********************6699999 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tg++k++++ +g ++g kk++v+y + r +k+ +++Wvmh+y+l Seita.1G217800.2.p 146 dhtvtDEHVRWHKTGRSKPIYD-NGVKKGWKKIMVLYktSHRGEKPDRAHWVMHQYHL 202 9988545889************.999***********4434778888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-36 | 41 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.563 | 57 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-12 | 58 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MARSWLITCR GIAKKIRYTT PSGNHRISEL IAEARRECPN CSHVIDNSDV AMQWPGLPAG 60 VKFDPSDLEL LEHLEEKIGL GGSRPHVLID EFIPIIDNDE GICYSHPENL PGMKTDGSNA 120 HFFHRVSKAY GRGQRKRRRV ISCSSDHTVT DEHVRWHKTG RSKPIYDNGV KKGWKKIMVL 180 YKTSHRGEKP DRAHWVMHQY HLGQEEDEKD GDLVVSKIFC QITNKSMEVS ETEAAYDKPD 240 ASASVIGPKT PTPKTNAPQP RLANNSPCET EQNVSILQDQ LLLQDEGEPI IPIVSLEDDA 300 MNPAWCAGAE EQQAVGGASR AQLNLDEPLL CREDPNSLND EALLPMDYPI LSQCRNEILD 360 RSLNTFYGLP DLHNVDLGTP PDLQLGDLQF GSQESLGSWL DRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G217800.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952971.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | Q6NQK2 | 5e-78 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | K3YSZ8 | 0.0 | K3YSZ8_SETIT; Uncharacterized protein | ||||
STRING | Si017393m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 5e-80 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G217800.2.p |
Entrez Gene | 101770994 |