PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G209100.1.p
Common NameLOC101773694, SETIT_017851mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 314aa    MW: 33878.3 Da    PI: 8.3785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G209100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53e-181562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+  ++q+G g+W++ +++ g++R++k+c++rw +yl
  Seita.1G209100.1.p 15 KGPWTPEEDQKLLAFIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding54.72.4e-1768113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Seita.1G209100.1.p  68 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-25765IPR009057Homeodomain-like
PROSITE profilePS5129418.591062IPR017930Myb domain
SuperFamilySSF466893.52E-3012109IPR009057Homeodomain-like
SMARTSM007172.5E-151464IPR001005SANT/Myb domain
PfamPF002491.9E-161562IPR001005SANT/Myb domain
CDDcd001672.73E-121762No hitNo description
PROSITE profilePS5129426.33363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2666117IPR009057Homeodomain-like
SMARTSM007175.8E-1767115IPR001005SANT/Myb domain
PfamPF002491.5E-1668113IPR001005SANT/Myb domain
CDDcd001672.75E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRSPCCEKE ARLKKGPWTP EEDQKLLAFI EQHGHGCWRS LPAKAGLRRC GKSCRLRWTN  60
YLRPDIKRGK FTLQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLAKM  120
GIDPVTHKPR ADAPGATASG ARYRAAAHLS HTAQWESARL EAEARLAREA KLRALASPPP  180
PPASAPAASG LESPTSTLSF SEGAMFAGAA HDDVPGAARA PVVLTPRSYG EAFGEHGDAP  240
GFLAGVLLDC SVAGAEQRFA AASTDASVGE QQEEEDKGYW SSILNMVNSS MSSSLTSEAV  300
TDPAMYLPAV PEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G209100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0853910.0BT085391.2 Zea mays full-length cDNA clone ZM_BFc0006G19 mRNA, complete cds.
GenBankBT0863810.0BT086381.2 Zea mays full-length cDNA clone ZM_BFc0159P01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952890.10.0transcription factor MYB16
SwissprotQ9LXF11e-108MYB16_ARATH; Transcription factor MYB16
TrEMBLK3YUA50.0K3YUA5_SETIT; Uncharacterized protein
STRINGSi017851m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.18e-89myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]