PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G201700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36098.4 Da    PI: 6.5111
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G201700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-18163217256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Le+ F+++++++ +++ +LAk+l+L  rqV vWFqNrRa+ k
  Seita.1G201700.1.p 163 RKKLRLSKEQSAFLEDSFKEHSTLTPKQKSDLAKRLNLRARQVEVWFQNRRARTK 217
                         788899***********************************************98 PP
2HD-ZIP_I/II122.81.7e-39163252191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr +l
  Seita.1G201700.1.p 163 RKKLRLSKEQSAFLEDSFKEHSTLTPKQKSDLAKRLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLAQENRRLQREVAELR-AL 252
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-18144217IPR009057Homeodomain-like
PROSITE profilePS5007117.054159219IPR001356Homeobox domain
SuperFamilySSF466896.27E-18160228IPR009057Homeodomain-like
SMARTSM003896.8E-16161223IPR001356Homeobox domain
CDDcd000864.19E-16163220No hitNo description
PfamPF000461.8E-15163217IPR001356Homeobox domain
PROSITE patternPS000270194217IPR017970Homeobox, conserved site
SMARTSM003403.4E-23219262IPR003106Leucine zipper, homeobox-associated
PfamPF021833.2E-11219252IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MPFRIHYMEL ELSLGDSPAP AKGASTPVLT PTHAGKREDH ELVLELGVGT VKRTEQDNQK  60
TQQQPEEDAH NQEEDGEACF HSESPVELSL GCPLLPASAG IGSLNSEECR REFDVSTFVV  120
DGDTVQGRSL STSSLPMEVP VRQAADQEAA EDEENSGVGG GARKKLRLSK EQSAFLEDSF  180
KEHSTLTPKQ KSDLAKRLNL RARQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLAQENR  240
RLQREVAELR ALRTAPYPFY GHLPASGFST ARVCPCDNKV ITAHHPGITT SSTVVAPPSP  300
VSTLFARPQF GPFTVHPVLR RQPSATS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211219RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G201700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952725.10.0homeobox-leucine zipper protein HOX7
SwissprotA2X6741e-106HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A368PMA80.0A0A368PMA8_SETIT; Uncharacterized protein
STRINGSi019736m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-56homeobox from Arabidopsis thaliana