PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G200500.1.p
Common NameLOC101783147, SETIT_016939mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 515aa    MW: 54733 Da    PI: 4.6499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G200500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11321366555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR++i +++ +L+el+P++      + +Ka++L + ++Y+k Lq
  Seita.1G200500.1.p 321 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIDYVKFLQ 366
                         99***********************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-17314377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-12314370No hitNo description
PROSITE profilePS5088817.18316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16318376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-9321366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGGFVDPFVP APAWPQDMVF TGTSWSGSAS SLADSAGTYL AAAPDEDTEF HLQNRSKPVF  60
LNGNAKEILS SVELHEQFLQ AQLQDDVTQG LNFEMDGALM ASTLGSVLST PSAISLADSA  120
PVVCSSNDSS GSEQSGLPQF LLGEQSVPSA AWPSTFMQIP SLVGEETSKS FGFGAVCNDD  180
LLREACAADG KNYPQLGNMP SVPLQLHNDV EFNTGKMLSF APGPGQQVNT NFEDLQISQK  240
EFSSLHHLNL SSLVSGQLSS FNATGVAHNP KQSNEVSSGK NGLNAPPFMA RSEVPNGSGI  300
AANGAPKPRV RARRGQATDP HSIAERLRRE KISDRMKNLQ ELVPNSNRTD KASMLDEIID  360
YVKFLQLQVK VLSMSRLGAT EAVVPLLTES QTESSSGGLL LSPRSGRQQA GRSSLLGQSE  420
LRDGASFEQE VMQLMENNMT TAMQYLQSKG LCLMPIALAS AISDQKGTSS EAVRPVNSGA  480
TDEEDGAGGE NHDAKEMLRG LNAFGSAREM KSRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G200500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749561e-148EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952733.10.0uncharacterized protein LOC101783147
TrEMBLK3YRP50.0K3YRP5_SETIT; Uncharacterized protein
STRINGSi016939m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-52LJRHL1-like 3