PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G195500.1.p
Common NameLOC101765177, SETIT_016562mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 674aa    MW: 74918.3 Da    PI: 6.073
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G195500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23123223198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +++aee+       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F  
  Seita.1G195500.1.p 123 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmsQNPPW--QELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL- 210
                         99****************************97444444..48************************************************. PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                          + +++el+v+v+r
  Seita.1G195500.1.p 211 -RGENGELRVGVRR 223
                         .449999*****97 PP
2Auxin_resp1033.6e-34249334183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdl...dpvrWpnSkWrsLk 83 
                         a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++s+err+sGt++g+  +   +++ W +S WrsLk
  Seita.1G195500.1.p 249 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNHKMSVGMRFKMRFEGDESPERRFSGTIIGLGSMpanSTSPWADSDWRSLK 334
                         789*************************************************************988753336789********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-43114252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-41119238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-21121223No hitNo description
PROSITE profilePS5086311.491123225IPR003340B3 DNA binding domain
SMARTSM010191.4E-21123225IPR003340B3 DNA binding domain
PfamPF023622.8E-21123223IPR003340B3 DNA binding domain
PfamPF065071.2E-32249334IPR010525Auxin response factor
PfamPF023092.8E-6524579IPR033389AUX/IAA domain
PROSITE profilePS5174522.754543625IPR000270PB1 domain
SuperFamilySSF542771.57E-11545620No hitNo description
PfamPF023098.8E-6590633IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MANAGAGAGG SGGVSDALFR ELWHACAGPL VTVPRQGELV YYFPQGHMEQ LEASTDQQLD  60
QHLPLFNLPS KILCKVVNVE LRAETDSDEV YAQIMLQPEA DQNEPTSPNP EPPEPERCNV  120
HSFCKTLTAS DTSTHGGFSV LRRHAEECLP QLDMSQNPPW QELVAKDLHG NEWHFRHIFR  180
GQPRRHLLTT GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRLMRQLTN MPSSVISSHS  240
MHLGVLATAS HAISTGTLFS VFYKPRTSRS EFVVSVNKYL EAKNHKMSVG MRFKMRFEGD  300
ESPERRFSGT IIGLGSMPAN STSPWADSDW RSLKVQWDEP SAVLRPDRVS PWELEPLDAT  360
NIQPPQPPLR NKRARPPASP SIAPELPPAF GFWKSPAEPT HAFSFSGLQR TQELYHSNPN  420
SIFSSPLNEG FNSKNERSTP TNNHLYWPVR DMRTESYSAS INKPPPERKQ ESVTAGCRLF  480
GIEISNAVSP VVTAASVGQD QPPAVSVDVE SDQLSQPSHA NKTDAPAASS ERSPHETESR  540
QVRSCTKVIM QGMVVGRAVD LTRLDGYDDL LHKLEEMFDI QGELSASLKK WKVIYMDDED  600
DMMLVGDDPW HEFCIMVKKI YIYSYEEAKS LIPKAKLPVI GDTIKPNPDK LSPESDMPQS  660
DSNNTAPVAA DKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013591357Auxin response factor 1
4ldw_A0.013591357Auxin response factor 1
4ldw_B0.013591357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G195500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0879910.0BT087991.1 Zea mays full-length cDNA clone ZM_BFb0342B01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952779.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLK3YQM00.0K3YQM0_SETIT; Auxin response factor
STRINGSi016563m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]