PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G188600.1.p
Common NameLOC101770581, SETIT_017798mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 324aa    MW: 34071.6 Da    PI: 7.4351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G188600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-10113161355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +ah   Er RR+r+++ f++L  l+P+ +      K++Ka+ + +++++Ik L+
  Seita.1G188600.1.p 113 KAHIVTERERRRRMKDLFSNLHALMPHiP-----DKVDKATLVGETIHFIKALE 161
                         58999**********************88.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.849110160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-12112172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-10113162No hitNo description
Gene3DG3DSA:4.10.280.101.7E-12114173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-8114161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-5116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00602252312No hitNo description
PROSITE profilePS516718.543252323IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAQDSPLHHQ DNASSDERSI TPPATMTFLG PAENDNGGSR IDSPVGMDAS KGKDVVLDDI  60
QGGEHGSASG AKANTNRSKG KHSAAGKAST NTAKDGFPKG KGSLAADEDG DVKAHIVTER  120
ERRRRMKDLF SNLHALMPHI PDKVDKATLV GETIHFIKAL EKTKVQLEKQ KQEQVLARQA  180
AAQAMSSLSV MQTAQGMAAM SNGWGPVPQQ QPLAAVAAAA PPPPLAAATG PAGFQTWSAP  240
NVVLSISDEK AVINLCLPRH PRMLTLVMSV LNKHGIDVIT AHVAAEGARS MITIYTSVNG  300
GENPSAEDIY KLAVSEIMVW LSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G188600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952702.10.0transcription factor bHLH95
TrEMBLK3YU520.0K3YU52_SETIT; Uncharacterized protein
STRINGSi017798m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-13bHLH family protein