PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G188300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 316aa    MW: 33440.6 Da    PI: 6.1635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G188300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13115159755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++Er RR+r+++ f++Lr+l+P+ +     kK++Ka+ +e+++++I+sL+
  Seita.1G188300.1.p 115 IMERERRRRMKELFSTLRDLMPHvP-----KKVDKATLVEETIDFIRSLE 159
                         79*********************77.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.519108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-13112171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10115159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-13115171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-5122160No hitNo description
PROSITE profilePS516718.52242315IPR002912ACT domain
CDDcd048732.48E-4242294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAQDGSQDHQ DTASSDERSF VPPTTMTLLD PTENDNGGSR IGSPVGMDAS KGKDVVPNAI  60
QGGEDSGGKA NTSRSEGKNS AAAIAAADAA GDGLTTKGKN SLAADDDGEL KVQIIMERER  120
RRRMKELFST LRDLMPHVPK KVDKATLVEE TIDFIRSLEK TKTQLEKQRQ QQVLARQAAA  180
EAGASSLSVS RTAHGMAALS DGWGPAPQQA PAAASAAARP VEFQTWSTPN VVLSVLTNGE  240
AVINVCAPRQ PRMLTMVVSV LKKHGIDVVS VQVAADRARS IFTIYTRVNG AGGENPSAED  300
MYKLVVSEIM VWLSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G188300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954978.10.0transcription factor bHLH95
TrEMBLA0A368PLU70.0A0A368PLU7_SETIT; Uncharacterized protein
STRINGSi017935m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-10bHLH family protein