PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G188200.1.p
Common NameLOC101770192, SETIT_017908mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 304aa    MW: 31917.1 Da    PI: 6.5237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G188200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09105150655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++Er RR++++  f+ L +l+P+ +     kK++ ++ + +++++IksL+
  Seita.1G188200.1.p 105 IIIERERRRKMKGMFNSLLDLMPHvP-----KKVDQVTLVDETINFIKSLE 150
                         589*********************77.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.20199149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11102161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-7105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11106162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-8106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAQDGPHGHQ DTSSSNERSF VPPTAVNFVG PAENNNGGSK IGSPVTMDAG KGKEVIPNAI  60
QGGEHGSPSG GEANAGRSGG KNAGNGLAKG ESSMAADDGN LKVNIIIERE RRRKMKGMFN  120
SLLDLMPHVP KKVDQVTLVD ETINFIKSLE QTKAQLEKKK QEQVLVRQAA ASSMSMPRTA  180
HGMAALSDGW DPLPQQKPAA SAAAAAGPLE FQTWSAPNVV LSVLTNDEAV INICAPRQPH  240
MLTLVLSVLS KYKIDVTSMQ VVADTAESLL TINTRVNGAS GENPSAEDIY KLAVSEIVVM  300
LSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G188200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952701.20.0transcription factor bHLH95
TrEMBLK3YUG20.0K3YUG2_SETIT; Uncharacterized protein
STRINGSi017908m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-19bHLH family protein