PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G187900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 277aa    MW: 29079.7 Da    PI: 8.8766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G187900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-20112161255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         gy+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+++++g
  Seita.1G187900.1.p 112 GYRGVRRRP-SGKWAAEIRDPR----KaARVWLGTFVTAEDAARAYDAAALRFRG 161
                         8********.7*********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-22112170IPR016177DNA-binding domain
PROSITE profilePS5103224.961112169IPR001471AP2/ERF domain
SMARTSM003805.1E-35112175IPR001471AP2/ERF domain
PfamPF008471.9E-13112161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-31112170IPR001471AP2/ERF domain
PRINTSPR003671.8E-9113124IPR001471AP2/ERF domain
CDDcd000184.38E-13120171No hitNo description
PRINTSPR003671.8E-9135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRPPQSSPAL VALTEDAEAA VIVAALTHVI THGRGAAPTP PGTSLAVPPC PSTATGCHLG  60
HVGQAACHVH DRSPCEQRLM ASATNELAPM AWPWSQEAQR ATAAAAASAR RGYRGVRRRP  120
SGKWAAEIRD PRKAARVWLG TFVTAEDAAR AYDAAALRFR GSRAMLNFPE DVLSLGHMPA  180
AAGSRQPGSG WDRTMDRSPC PEIVSRREAM DGFIGGGNGR FLGFWSIGIS SSSLTPKPTC  240
SAAPVVAPLL SESHRTGSSG IEDDAEGVWE RTNSAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21113174668ATERF1
3gcc_A1e-21113174668ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G187900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914074e-45FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684176.11e-131ethylene-responsive transcription factor ERF114-like
TrEMBLA0A368PM570.0A0A368PM57_SETIT; Uncharacterized protein
STRINGSi019270m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-16related to AP2 6