PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G183300.1.p
Common NameSETIT_019470mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 259aa    MW: 27475.5 Da    PI: 8.0689
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G183300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551.1e-171150342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i n+  r  tf kRr+g++KKA+EL +LC+++++v++++ 
  Seita.1G183300.1.p 11 IANDATRRATFKKRRKGLMKKASELATLCGVRACVVVYGA 50
                        8899**********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.703149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-23186IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-22160IPR002100Transcription factor, MADS-box
CDDcd002661.01E-33286No hitNo description
PRINTSPR004047.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-181149IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MARKKVSLQW IANDATRRAT FKKRRKGLMK KASELATLCG VRACVVVYGA GESQPEVWPE  60
APGAAEDVVA RFRAVPELDQ CKKMLDMEGY LKQQVDKLRE QLHKAQRENR ERETALLLHD  120
AIAGRLPGLA GLSVEEVGSL GWMVENRIQA VRAAIAQLQG EGQDLPAAAL QLPQPSLPVA  180
PYYGIGAGAG HGEMMMQAPH PQGWMMAGGE IGALAYGGFV GASTGTSTSA GADMPPQFGS  240
MGAGFAWPDT AGQSFPSM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVSLQWIANDATRRATFKKRR
22125KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G183300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275261e-122KJ727526.1 Zea mays clone pUT5386 MADS transcription factor (MADS66) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954970.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A368PNV80.0A0A368PNV8_SETIT; Uncharacterized protein
STRINGSi019470m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-35AGAMOUS-like 80