PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G173200.1.p
Common NameLOC101755860, SETIT_017674mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 349aa    MW: 37409.5 Da    PI: 4.9184
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G173200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.45.9e-2629134186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                         rWt+qe+l+Lie++r +e r +rg                        + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e
  Seita.1G173200.1.p  29 RWTRQEILVLIEGKRMVEGRGGRGGrgrvaaaaaaaaasassgeaaaaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWE 119
                         8********************99866778888889999999999999888***************************************** PP

            trihelix  69 kkrtsessstcpyfdqle 86 
                         +     + s+ p f  ++
  Seita.1G173200.1.p 120 RAA---AASREPSFWAMR 134
                         *86...333557777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-52941IPR009057Homeodomain-like
PfamPF138375.3E-1030133No hitNo description
Gene3DG3DSA:1.10.10.606.2E-575108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSNAGDPAGA AAPAAATVTP SGRAPRLPRW TRQEILVLIE GKRMVEGRGG RGGRGRVAAA  60
AAAAAASASS GEAAAAALEP KWAAVAEYCR RHGVERGPVQ CRKRWSNLAG DYKKIKEWER  120
AAAASREPSF WAMRNDARRE RRLPGFFDRE VYDILEGRGR AILAGRSAGN AAEEEEAVAV  180
ARVEEEKEAG PAEAVFDSGR PATEEALFSE DEEDEEEEAP AAAPPPPPPP VIAVPVSEKP  240
DASRQQQSAE QGTSKDKQPE QSTERDAPAQ QGGQKRPRTD EEAGEGATDL QSKLIQILDR  300
NSRMVAAQLE VQNQNCELDR EQRKDQANSL VLVLGRLADA LGRIADKL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G173200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952586.10.0trihelix transcription factor ASR3
TrEMBLK3YTS80.0K3YTS8_SETIT; Uncharacterized protein
STRINGSi017674m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-73Trihelix family protein