PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G169900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 27851.3 Da PI: 4.7679 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9e-08 | 143 | 185 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E+ l++ + + g+ W++ +r+ Rt+ q+ s++qk Seita.1G169900.1.p 143 KWTEYEHRLFLAGLPFYRGN-WNAMSREYLMSRTASQIASHYQK 185 8*****************99.*********99***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 1.8E-7 | 139 | 186 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 9.72E-8 | 142 | 185 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-6 | 143 | 185 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-5 | 143 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MHHDGYVAAA AAPPLALAAS PTLEPEQEPK WTRRDDKFLE LLLFNRNTIS LHIASSIIGK 60 TPAQIHQRCT FMFAELSHVL ESLEVLTPLV WDMEIAAMAA AAEEEVVPEA VVPAAPPVAA 120 RKNSAERAIG AGGAKRNKKA AEKWTEYEHR LFLAGLPFYR GNWNAMSREY LMSRTASQIA 180 SHYQKASIHD ITEPGIAAAF AVSGGEAAAW KGELPRSEAS ARGQENEPWE PIESGEDGLS 240 PVEEFPSEDD PGTLLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G169900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986850.1 | 1e-142 | transcription factor SRM1 | ||||
TrEMBL | A0A368PM01 | 0.0 | A0A368PM01_SETIT; Uncharacterized protein | ||||
STRING | Si039462m | 1e-141 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 2e-11 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G169900.1.p |