PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G164400.1.p
Common NameLOC101761654, SETIT_019082mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 483aa    MW: 52949.4 Da    PI: 5.0102
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G164400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.2e-34271182101
                         HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
        HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                         Fl k+ye+++d++ + ++sws ++  sfvv+++ efa ++Lp+yFkhsnf+SF+RQLn+YgF+k++ e+         weF++++F kg+k
  Seita.1G164400.1.p  27 FLLKTYEMVDDPSSDAVVSWSdASDGSFVVWNPPEFAARMLPTYFKHSNFSSFIRQLNTYGFHKIDPER---------WEFANEYFVKGQK 108
                         9********************66669****************************************999.........************* PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  92 ellekikrkk 101
                         +ll++i+r+k
  Seita.1G164400.1.p 109 QLLKNIHRRK 118
                         ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5723117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-3423117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.2E-3623117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3027117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEVAGARGSG GSGGGGGGGG GGGPAPFLLK TYEMVDDPSS DAVVSWSDAS DGSFVVWNPP  60
EFAARMLPTY FKHSNFSSFI RQLNTYGFHK IDPERWEFAN EYFVKGQKQL LKNIHRRKPI  120
HSHSHQPGAL PDNERALFED EIDRLSREKT TLQTDLWKFN QQQSGAMSQI EDLERRVLDM  180
EQRQVKMLSF LQQASKNPQF VSKLAKMAEA SPIFADAFHK KRRLPGLEYS NEAAETTSYD  240
DHSSTSRQEM GNILNQHFSD KLKLGLCPAM TESNLITLST HSSHEDNGSP HAGKHPDCER  300
TGVECLPLVP QMMELSDTGT SICPSKGQGV SFTAATNDVG ILPCHLNLTL ASCSMDVNRS  360
QISHANGNTT EEEKDSPPEA ATTATMEEDN GIARRHDDID TQNKASGDSA TAADTTVTPH  420
GDSQAPSEEP AAPPVVANDK FWEQFLTERP GCSEAEEASS TLRRDPYEDT RSDRRDMGQL  480
KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2251171129Heat shock factor protein 1
5d5v_B3e-2251171129Heat shock factor protein 1
5d5v_D3e-2251171129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G164400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952518.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLK3YXT40.0K3YXT4_SETIT; Uncharacterized protein
STRINGSi019082m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-107HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]