PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G155800.1.p
Common NameSETIT_020208mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 263aa    MW: 27544.3 Da    PI: 6.837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G155800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-1375117855
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          E+rRR+r+N+++  Lr+++P+      +K++Ka+i + A+eYI +Lq
  Seita.1G155800.1.p  75 TEQRRRRRLNDRLYALRSVVPNI-----TKMDKASIIKDAIEYILQLQ 117
                         6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.33267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1473122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1773138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1674133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-1175117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-783114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPTMGDSLE CLWDCLDVEG LQSLNIGADG DNAVAGGQHH DGYSSAPDAG SNSSVAAAAA  60
GSDGSRPGNN NVIVTEQRRR RRLNDRLYAL RSVVPNITKM DKASIIKDAI EYILQLQQLE  120
HQLLAELALL EAATATAHHH PHPLLIGMPM PFTGAATAFA AIGGDDDCAA VSPTKKMKRN  180
PSFSSHGSSS PPVDALEVRV SGAGDKVLVV SVACRHRRDA VAKVCRALEG LRLRVIAANV  240
TAASGTVTHT ALVQVSFCCF CL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1171117854Transcription factor MYC2
5gnj_B5e-1171117854Transcription factor MYC2
5gnj_E5e-1171117854Transcription factor MYC2
5gnj_F5e-1171117854Transcription factor MYC2
5gnj_G5e-1171117854Transcription factor MYC2
5gnj_I5e-1171117854Transcription factor MYC2
5gnj_M5e-1171117854Transcription factor MYC2
5gnj_N5e-1171117854Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986RRRLNDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G155800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667039e-40BT066703.1 Zea mays full-length cDNA clone ZM_BFb0053N17 mRNA, complete cds.
GenBankEU9556209e-40EU955620.1 Zea mays clone 1539722 DNA binding like mRNA, complete cds.
GenBankKJ7280269e-40KJ728026.1 Zea mays clone pUT6163 bHLH transcription factor (bHLH108) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952451.20.0transcription factor bHLH35
TrEMBLA0A368PKP70.0A0A368PKP7_SETIT; Uncharacterized protein
STRINGSi020208m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-20bHLH family protein