PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G148200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 147aa    MW: 16054.1 Da    PI: 4.4877
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G148200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.73e-08344849
                        HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        ++q++fs R n++l  A+ LS   +a vavi fs+tg+ + y
  Seita.1G148200.1.p  3 QNQTSFSERTNTLLSMAKDLSQEFGAHVAVIEFSPTGEPKAY 44
                        68***********************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.615148IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-9366IPR002100Transcription factor, MADS-box
PfamPF003192.3E-8444IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MAQNQTSFSE RTNTLLSMAK DLSQEFGAHV AVIEFSPTGE PKAYGAPTAD SILRTCLPEI  60
HSSPFQACSK TMGEATARVD GMKREAEETA FLDVASVGKQ NWWEVDVEAL GADELPVFVM  120
ALDVLRTDVQ RHLDAMESSR KEKMQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G148200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967110.11e-65uncharacterized protein LOC101775407
TrEMBLA0A368PLE61e-104A0A368PLE6_SETIT; Uncharacterized protein
STRINGSi019649m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7989512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-10AGAMOUS-like 61