PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G117000.1.p | ||||||||
Common Name | LOC101773546, SETIT_017899mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 32877.6 Da PI: 8.6025 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl Seita.1G117000.1.p 15 KGLWSPEEDQRLRDYILKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl Seita.1G117000.1.p 68 RGMFSQEEEDVVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113 788*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.46 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.42E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.295 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.53E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGCRSCEKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FSQEEEDVVI NLQAKLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKRVMQA 120 QGGSNPKSPP ELTSMSTTEP AMSMSMPHHH HVKNSSGGST TTSHDQDATN ISSNGGGSHG 180 LSAPAPLLTA QQPFDHQAQQ QPKNFVFSDW GVPAPAPAPE SYSVSAHWPA STASSGNVTP 240 SHGGAFGDRM SGSYGALPLH QDHQIGAAAA GHGAATGIAG SGYFDLLNMG DIYGGFSSTN 300 DDLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-25 | 9 | 117 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G117000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368664 | 1e-143 | AK368664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077L03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952152.1 | 0.0 | transcription factor LAF1 | ||||
Swissprot | Q8LPH6 | 2e-53 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | K3YUF3 | 0.0 | K3YUF3_SETIT; Uncharacterized protein | ||||
STRING | Si017899m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12296 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 5e-56 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G117000.1.p |
Entrez Gene | 101773546 |