PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G110100.2.p | ||||||||
Common Name | SETIT_019518mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 534aa MW: 56159.6 Da PI: 4.3095 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2e-12 | 289 | 332 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Seita.1G110100.2.p 289 VAERKRRKKLNERLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 332 58*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.11E-17 | 280 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.878 | 282 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-16 | 288 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-16 | 289 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.72E-13 | 289 | 336 | No hit | No description |
Pfam | PF00010 | 5.7E-10 | 289 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00531 | 409 | 473 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MGGGDHRCMA ATAAASAGDG GGSVEAALRP LVGANAWDYC IYWRLSPDQR FLEMAGLCCS 60 SEFEAQVSAL GELPSSIPLD SSSAGMHAEA MMSNQPIWQT SCVPELPTSY STELGSAGPR 120 TRLLVPIAGG LVELFAARYM AEEEQMAELV MAQCGVPARA TEGEGDEGGA AVHTWPEAPG 180 FAWDGADPQR MFGAVPPSLS LFDAAGDPFL VAPPPGVVDD AAAAGWQYVA AVAAQQEQHG 240 AARAGGADSG SEGSDLQGDP EDDGDDDVQG RGGGGGKGGG KRQQCKNLVA ERKRRKKLNE 300 RLYKLRSLVP NITKMDRASI LGDAIDYIVG LQNQVKALQD ELEDPADGAP DVLLDHPPPA 360 SLVGLENDDS PRASKRARVA AAAPAEEEKG HDMEPQVEVR QVEANEFFLQ VLCEHKPGRF 420 VRLMDAVNAL GLDVTNVNVT SYKTLVLNVL NVARRDNEVA VQADRVRDSL LEVTRESYGV 480 WSAAAPAAGS SGSIDVKLDC VDVKLDGGVD VQAPAAAAED HYGGYNHLLQ YLT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 280 | RGGGGGKGGGK |
2 | 290 | 297 | ERKRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G110100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679432.1 | 0.0 | transcription factor TDR, partial | ||||
Swissprot | Q6YUS3 | 1e-175 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | K3YZ12 | 0.0 | K3YZ12_SETIT; Uncharacterized protein | ||||
STRING | Si019518m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G110100.2.p |