PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G110100.1.p

Common Name

SETIT_019518mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 534aa MW: 56159.6 Da PI: 4.3095

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G110100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2e-12	289	332	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Seita.1G110100.1.p 289 VAERKRRKKLNERLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 332 58*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.11E-17	280	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.878	282	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-16	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-16	289	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.72E-13	289	336	No hit	No description
Pfam	PF00010	5.7E-10	289	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00531	409	473	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MGGGDHRCMA ATAAASAGDG GGSVEAALRP LVGANAWDYC IYWRLSPDQR FLEMAGLCCS 60 SEFEAQVSAL GELPSSIPLD SSSAGMHAEA MMSNQPIWQT SCVPELPTSY STELGSAGPR 120 TRLLVPIAGG LVELFAARYM AEEEQMAELV MAQCGVPARA TEGEGDEGGA AVHTWPEAPG 180 FAWDGADPQR MFGAVPPSLS LFDAAGDPFL VAPPPGVVDD AAAAGWQYVA AVAAQQEQHG 240 AARAGGADSG SEGSDLQGDP EDDGDDDVQG RGGGGGKGGG KRQQCKNLVA ERKRRKKLNE 300 RLYKLRSLVP NITKMDRASI LGDAIDYIVG LQNQVKALQD ELEDPADGAP DVLLDHPPPA 360 SLVGLENDDS PRASKRARVA AAAPAEEEKG HDMEPQVEVR QVEANEFFLQ VLCEHKPGRF 420 VRLMDAVNAL GLDVTNVNVT SYKTLVLNVL NVARRDNEVA VQADRVRDSL LEVTRESYGV 480 WSAAAPAAGS SGSIDVKLDC VDVKLDGGVD VQAPAAAAED HYGGYNHLLQ YLT*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MGGGDHRCMA ATAAASAGDG GGSVEAALRP LVGANAWDYC IYWRLSPDQR FLEMAGLCCS  60
SEFEAQVSAL GELPSSIPLD SSSAGMHAEA MMSNQPIWQT SCVPELPTSY STELGSAGPR  120
TRLLVPIAGG LVELFAARYM AEEEQMAELV MAQCGVPARA TEGEGDEGGA AVHTWPEAPG  180
FAWDGADPQR MFGAVPPSLS LFDAAGDPFL VAPPPGVVDD AAAAGWQYVA AVAAQQEQHG  240
AARAGGADSG SEGSDLQGDP EDDGDDDVQG RGGGGGKGGG KRQQCKNLVA ERKRRKKLNE  300
RLYKLRSLVP NITKMDRASI LGDAIDYIVG LQNQVKALQD ELEDPADGAP DVLLDHPPPA  360
SLVGLENDDS PRASKRARVA AAAPAEEEKG HDMEPQVEVR QVEANEFFLQ VLCEHKPGRF  420
VRLMDAVNAL GLDVTNVNVT SYKTLVLNVL NVARRDNEVA VQADRVRDSL LEVTRESYGV  480
WSAAAPAAGS SGSIDVKLDC VDVKLDGGVD VQAPAAAAED HYGGYNHLLQ YLT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	280	RGGGGGKGGGK
2	290	297	ERKRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G110100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679432.1	0.0	transcription factor TDR, partial
Swissprot	Q6YUS3	1e-175	TDR_ORYSJ; Transcription factor TDR
TrEMBL	K3YZ12	0.0	K3YZ12_SETIT; Uncharacterized protein
STRING	Si019518m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5530	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-40	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.1G110100.1.p

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]