PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G099800.1.p
Common NameLOC101753020, SETIT_016592mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family BES1
Protein Properties Length: 656aa    MW: 73443.9 Da    PI: 6.5122
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G099800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822156.81.5e-48461864134
              DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl...eeaeaagssasaspe 91 
                         g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r +  p      +++ g ++ a +e
  Seita.1G099800.1.p  46 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSNPPSlspPPPSQLGMFQVAPVE 136
                         67899**************************************************************88887787778999********** PP

              DUF822  92 sslq.sslkssalaspvesysaspksssfpspssldsislasa......a 134
                         ++   s+l+s+a+ +p++s+++ +++++++spsslds+ ++ +       
  Seita.1G099800.1.p 137 TPAFiSTLNSYAIGTPLDSQASALQTDDSLSPSSLDSVVAERSiktenyG 186
                         ****9*********************************887665554441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.5E-4646196IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.802.9E-175215649IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.21E-170216649IPR017853Glycoside hydrolase superfamily
PfamPF013735.8E-83238610IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54253267IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54274292IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54296317IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54389411IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54462481IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54496512IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54513524IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54531554IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-54569591IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MKLPHPHPPL VLGEEEPSPP PQRRPRGFAS GPAPSAGAAG PPRRRGERER EREKERTKLR  60
ERHRRAITSR MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVQPDGTT FRSSNPPSLS  120
PPPPSQLGMF QVAPVETPAF ISTLNSYAIG TPLDSQASAL QTDDSLSPSS LDSVVAERSI  180
KTENYGNSSS ANSLNCMDND QLLRSSAVLA GDYTKTPYIP VYASLPMGII NNHCQLVDPE  240
GVRAELRHLK SLNVDGVVVD CWWGIVEAWI PRKYEWSGYR DLFGIIKEFK LKVQVVLSFH  300
VSGGTGSGDV LISLPKWIIE IAKENQDIFF ADREGRRNTE CLSWGVDKER VLRGRTGIEV  360
YFDFMRSFHM EFRNLSEEGL ISAIEIGLGA SGELRYPSCP ERMGWKYPGI GEFQCYDRYM  420
QKNLRQSAAS RGHLFWARGP DNAGYYNSRP RETGFFCDGG DYDSYYGRFF LNWYSGVLID  480
HVDQVLSLAT LAFDGAEILV KIPSIYWWYR TASHAAELTA GFYNPTNRDG YSPVLKMLKK  540
HSVILKLVCY GPEFTVQEND EACADPEGLT WQVVNAAWDH GLSLCIESAL PCLDGDMYSQ  600
ILDTTKPRND PDRHHASFFT YRQQPPSLLQ RDAYFPELRT FVKCMHGEAP QNGED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12521864811444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G099800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952019.30.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLK3YQP80.0K3YQP8_SETIT; Beta-amylase
STRINGSi016592m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]