PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G092500.1.p

Common Name

LOC101757861, SETIT_017191mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 450aa MW: 49130.8 Da PI: 6.4517

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G092500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	269	323	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerFveav++LGG+ekAtPk l+lmkv+gLt++hvkSHLQkYR Seita.1G092500.1.p 269 KTRLRWTLELHERFVEAVNKLGGPEKATPKGALKLMKVEGLTIYHVKSHLQKYRF 323 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.868	266	326	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-29	268	324	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.16E-16	268	323	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-24	269	323	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	271	322	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-21	358	404	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MSTQSIISVK QFAGPHRMAH TCTAPQPSAH NLLSAKSDNC GSAHDPQSSW AAVQTSSIKS 60 EMVGSLSLTK ILPFNLEKCS PGSNPDSAVS HVSQAELSDP VSSSSSTFCT SMFSSFQTNS 120 ESCRQKGALP FLPHPPKCEQ KLQQQISAGQ SSSSSSLLFG ADLRSGGHDD AGDLKDFLNL 180 SGDVSEGSFH GESSAMAFSE QMEFQFLSEQ LGIAITNNEE SPRLDDIYDR PLQTSSCPVP 240 SYSGQEDLPS AVSPVKVQLS SSRPEACNKT RLRWTLELHE RFVEAVNKLG GPEKATPKGA 300 LKLMKVEGLT IYHVKSHLQK YRFAKYLPET KEDKKSSSEG KKSQSAIPGN DAGKKSLQVA 360 EALRVQIEVQ KQLHEQLEVQ RQLQLRIEEH ARYLQKILEE QQKARNSLST TRNSAQEELP 420 ESTEKEETGM KVETSSEPLS RSKISDTDV*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MSTQSIISVK QFAGPHRMAH TCTAPQPSAH NLLSAKSDNC GSAHDPQSSW AAVQTSSIKS  60
EMVGSLSLTK ILPFNLEKCS PGSNPDSAVS HVSQAELSDP VSSSSSTFCT SMFSSFQTNS  120
ESCRQKGALP FLPHPPKCEQ KLQQQISAGQ SSSSSSLLFG ADLRSGGHDD AGDLKDFLNL  180
SGDVSEGSFH GESSAMAFSE QMEFQFLSEQ LGIAITNNEE SPRLDDIYDR PLQTSSCPVP  240
SYSGQEDLPS AVSPVKVQLS SSRPEACNKT RLRWTLELHE RFVEAVNKLG GPEKATPKGA  300
LKLMKVEGLT IYHVKSHLQK YRFAKYLPET KEDKKSSSEG KKSQSAIPGN DAGKKSLQVA  360
EALRVQIEVQ KQLHEQLEVQ RQLQLRIEEH ARYLQKILEE QQKARNSLST TRNSAQEELP  420
ESTEKEETGM KVETSSEPLS RSKISDTDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-25	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-25	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-25	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-25	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-25	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-25	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-25	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-25	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G092500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038317	1e-152	BT038317.1 Zea mays full-length cDNA clone ZM_BFb0227D23 mRNA, complete cds.
GenBank	EU954590	1e-152	EU954590.1 Zea mays clone 1472551 hypothetical protein mRNA, complete cds.
GenBank	JX469978	1e-152	JX469978.1 Zea mays subsp. mays clone UT3338 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698680.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	0.0	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	K3YSE7	0.0	K3YSE7_SETIT; Uncharacterized protein
STRING	Si017191m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Seita.1G092500.1.p
Entrez Gene	101757861

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]