PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G091900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 557aa    MW: 60130.7 Da    PI: 10.0901
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G091900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.6e-41260336278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+
  Seita.1G091900.1.p 260 CQVEGCKIDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLDVFDQKKRSCRRRLNDHNARRRKPQP 336
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-32253321IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.761257334IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-38259339IPR004333Transcription factor, SBP-box
PfamPF031102.4E-31260333IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MDAKRGAGHT ILRVLDRLLG VLSFLSARFR LSFSVFWFLR PWFPLSFLPH CPCQLPQLQC  60
KNFQQDTDSS FAIIRKGARR TAGIFGSGMG SFGMDWSQKG SVLWDWENLP PIGANGNLVP  120
QAEAKFAGVE ITRHGSVHSS CGTFSSSSEM GYGSSKSSIS ASIDSSPKAG NNMELNFAPA  180
RVPDKYIRKN TDLRTSPSSV IAVSSGEPVL SLKLGKRTYF EDACGGQSVK SSPSDSSIVT  240
PPAAPVKKAK AAQNVQNSYC QVEGCKIDLS SAKDYHRKHK VCEAHSKAPK VVVAGLERRF  300
CQQCSRFHGL DVFDQKKRSC RRRLNDHNAR RRKPQPEAIS FGSSRLPAMF YGTDPRQQTS  360
LLFGQAPYGQ IRSRASSSWD NPGGAFKFAE TKASWLKPAG ATGLDALHLS SQQVWNNIMP  420
HGAHQDFAGF MAFKGTSAKV LNQGVEASVV ASDSNGNPDL QRALSLLSNN SADAGNNQPT  480
TQLHPGLSAL ASTSNAVMQQ ASPPGLWQDG TALDLHARFQ ALDPMGNGSA IAAAHELQLP  540
RPPSYNGSSS HYDLTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-262603331184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315332KKRSCRRRLNDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G091900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951926.10.0squamosa promoter-binding-like protein 3 isoform X1
SwissprotA2X0Q61e-171SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-171SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A368PJE80.0A0A368PJE8_SETIT; Uncharacterized protein
STRINGPavir.Ab00358.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-41squamosa promoter binding protein-like 2