PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G090900.1.p
Common NameLOC101785276, SETIT_016147mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 1134aa    MW: 125421 Da    PI: 6.2682
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G090900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.83.2e-21140241199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d +  +W++++i+r++++r++lt+GW+ Fv  ++L +gD+v+F   
  Seita.1G090900.1.p 140 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWTFRHIFRGQPKRHLLTTGWSLFVGGKRLFAGDSVIFV-- 227
                         99*****************************9555544.49************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Seita.1G090900.1.p 228 RDERQQLLLGIRRA 241
                         4577888****997 PP
2Auxin_resp117.41.2e-38266349183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+   rr++Gt++g+sdldpvrW+nS+Wr+L+
  Seita.1G090900.1.p 266 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 349
                         79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-40129269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-39133255IPR015300DNA-binding pseudobarrel domain
CDDcd100179.74E-18139231No hitNo description
PfamPF023628.2E-19140241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.491140242IPR003340B3 DNA binding domain
SMARTSM010193.2E-20140242IPR003340B3 DNA binding domain
PfamPF065071.6E-33266349IPR010525Auxin response factor
PfamPF023094.6E-99981085IPR033389AUX/IAA domain
PROSITE profilePS5174528.32110001084IPR000270PB1 domain
SuperFamilySSF542771.77E-710171079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1134 aa     Download sequence    Send to blast
MKQSPASSGV APAAAAASAG GAPPEGERKA PAINADLWYA CAGPLVSLPP VGSLVVYFPQ  60
GHSEQVAASM QKDIDAHVPS YPNLPSKLIC LLHSVTLHAD PDTDEVYAQM TLQPVNTYGK  120
EALQLSELAL KHARPQMEFF CKTLTASDTS THGGFSVPRR AAEKILPPLD FNMQPPAQEL  180
QARDIHDTVW TFRHIFRGQP KRHLLTTGWS LFVGGKRLFA GDSVIFVRDE RQQLLLGIRR  240
ASRQPTNISS SVLSSDSMHI GVLAAAAHAA ANNSPFTIFY NPRASPTEFV IPFAKYQKAL  300
YSNQISLGMR FRMMFETEEL GMRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESAAGER  360
RNRVSMWEIE PIAAPFFICP QPFFGVKRPR QLDDESSEME NLFKRAMPWL GEEICIKDAQ  420
TQNTTMPGLS LVQWMNMNRQ QNSTLANTGI QSEYLRSLSN PAMQNLGATE LARQLYVQNH  480
LLQQNSAQLN ASKLPQQMQP INELSKGVLS FNQLDVITNQ EQKQEAGNQQ RQQQASNQAI  540
PLSQAQASLA QAQVIIQNQM QQQQQQHLSP TKNEQGTSDQ QLLLSQQQQD QNLQLQQHQQ  600
LLLQQLQRQQ QHNQQLNKLP GQLVNLAGQQ TQLSDQELQL QLLQKLQQQA LISQPAVTLS  660
RLPLIQEQQK LLLDMQQLSG SRSLAQQRIM PQQDSKVSLQ ASPSPPPMKP EQQQKLSQKQ  720
VALADMSDVA FPSITPTNVV SKAGSSLMIP GAAQSVLTEE LPSCSTSPST ANGNHLAHPN  780
IGRNDHCKVN TEKVPQSSAL MSIPTSVEAV TAAPVMAKEL LNHNVKENVI TSKSPTCGTG  840
PDNLLNIVPS TDNLETASSA TSLWPTQTDG LLHQGFPTSN FNQQQMFKDA LPDVEIQDVD  900
PTNNAFFGIS NDGPLGFPME TEGLLVSALN PVKCQTHMST DVENNYRIQK DAQQEISTSM  960
VSQSFGQSDI AFNSIDSAIN DGALLNRNSW PPAPPPQRMR TFTKVYKRGA VGRSIDIGRY  1020
AGYEELKHAL ARMFGIEGQL EDRQRIGWKL VYKDHEDDIL LLGDDPWEEF VNCVKCIRIL  1080
SPQEVQQMSL DGDLGNNVLS NQACSSSDGG NAWRPRCDQN PGNPSIGFYD QFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1632637045388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G090900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045350.0HM004535.1 Zea mays auxin response factor 20 (ARF20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951920.10.0auxin response factor 5
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLK3YPF50.0K3YPF5_SETIT; Auxin response factor
STRINGSi016147m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19