PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G077600.1.p
Common NameSETIT_019299mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 322aa    MW: 34216.9 Da    PI: 6.3128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G077600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-163175145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        kri+  s  +v fskRrng+ KKA EL+vL++a  a+++fs+ +k
  Seita.1G077600.1.p 31 KRIKCASATHVCFSKRRNGLYKKATELCVLTGASLAIVVFSPADK 75
                        68999999*********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.23E-212393IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-202382IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.0112383IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-132545IPR002100Transcription factor, MADS-box
PfamPF003199.6E-193278IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-134560IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-136081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAKEPEMVAV AEAGGERKRK KTLGRQKIEI KRIKCASATH VCFSKRRNGL YKKATELCVL  60
TGASLAIVVF SPADKPYSLG YPSVHAVLEG YLDPASYVPP TAAEAAALAA AAREYECERE  120
RLDKALEAEK RRRIALDAAA RAAGVWTGDD DVRLKGMPEL VAMLAALERV QAEANMMQRA  180
HEVIAEEAIM MQQCAAAAGA GDAAISAFQF EYPGAGTFTA DGAGGAGGSS YYQEAMGAQM  240
MLMGGNVVSH GAHAPLPFAP MLLPPDLPPQ PHFNYGSDRY NIAGYGYGYG YDLVDGSNHG  300
AAYEMEGFHG TRTTTTCNFF G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11620RKRKK
2129133KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G077600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954705.20.0MADS-box protein FLOWERING LOCUS C
TrEMBLK3YYE90.0K3YYE9_SETIT; Uncharacterized protein
STRINGSi019299m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22AGAMOUS-like 61