PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G077200.1.p
Common NameLOC101766262, SETIT_016262mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 908aa    MW: 99698.9 Da    PI: 5.484
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G077200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24134235199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Seita.1G077200.1.p 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfnQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 221
                         99*****************************8444443..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Seita.1G077200.1.p 222 -WNDNNQLLLGIRRA 235
                         .7777778***9997 PP
2Auxin_resp119.13.5e-39260343183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Seita.1G077200.1.p 260 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-43126249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-22133234No hitNo description
PfamPF023626.7E-23134235IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352134236IPR003340B3 DNA binding domain
SMARTSM010191.6E-25134236IPR003340B3 DNA binding domain
PfamPF065075.7E-34260343IPR010525Auxin response factor
PfamPF023096.6E-8765860IPR033389AUX/IAA domain
SuperFamilySSF542773.34E-8766853No hitNo description
PROSITE profilePS5174524.683775859IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MKLSPSAAGG LQDQPASPEE AEENKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHGEQV  60
AASTNKEMES QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP  120
AELGGASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPLAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL  360
WEIEPLTTFP MYPSPFALGL KRPWPTGLPS LYGGRDDGLT SSLMWLRDGT NPSFQSLNFG  420
GLGTSPSPWM QPRMDNSLLG LQSDMYQTIA AAAALQGTTK QISPSLMQFQ QPQNIVGRSA  480
LLSNQIMQQV QPQFQQMYNQ NINDNTVQGH TQAEYLQQQL QRCHSFSEQK PQLHPQQQRQ  540
ESQQQQECVQ TPQNQQLHCL PNALSAFSQL SSVTQSPSST LPAVPAFSHQ QNFADTNISA  600
LSPSGGSSMQ GMLGQLPSDA PSSLPCVARN TPLSISDPWS SKRVAVESVN PSRPHVVSAQ  660
IEQLDMTPCN LPQNSALAPL PGRGCLVDQD ESSDPQNHLL FGVNIDSQSL LMQGGIPGHQ  720
NDNDSSTIPY STSNFLSPSQ NDFPLGQPLP STGCLDESSY VPSAENSEQA NQQFATFVKV  780
YKSGTVGRLL DITRFSSYDE LRSEVGRLFG LEGQLEDPLR SGWQLVFVDG EDDVLLVGDD  840
PWQEFVNSVS CIKILSLEEV QQMGKQGIEL LSSAPARRLS NGCDSYVSRQ ESKNLSTGMT  900
PVGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612736451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G077200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951871.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLK3YPS00.0K3YPS0_SETIT; Auxin response factor
STRINGSi016262m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]