PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G069100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 392aa    MW: 41545.6 Da    PI: 4.28
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G069100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.41.4e-1182162170
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...........rergferspkqCkekwenlnkrykkikegekk 70 
                         +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++           r+rg +r + +C+ +we l+ +y +++++e +
  Seita.1G069100.1.p  82 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaasealapgpaRRRGSKRAAAECRRRWEALAAEYGAVRRWEVR 162
                         5*****************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-681170No hitNo description
PROSITE profilePS500906.64483150IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDPAAAAQPC VIQALPAHSK ALPPPPLVQA LPAHHSPPAK THPPPAATPT SSSSGPKRRP  60
PPPPLGPAPP SPRRTRSGGA PEWTPAETLA LVAEVAAVDD GWSRSVSAFQ KWAMVAENLA  120
ASEALAPGPA RRRGSKRAAA ECRRRWEALA AEYGAVRRWE VRTGGRYWEM GAAARRKAGL  180
PVEFDAEVYG AMDALIRVEE ALLADAAGGG GGAEEVEGLV GGGASVEVGE QDGVHVREVG  240
EAEDGVQENE TVEEANGEEE DEEEEVEEEE EEDEKQEEMQ VDGSNADASN DLEGHEVGTN  300
SEPEKSQNNA WELANKLQEN AQHIHTILKE EADEDAGQNH ALAGSVSPDA MKTTRQKADE  360
LIKSLGGLVS YLNQFTELVK ENGFENIVGM T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G069100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341131e-139BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds.
GenBankBT0857101e-139BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds.
GenBankEU9699571e-139EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701598.10.0trihelix transcription factor ASR3
TrEMBLA0A368PHJ70.0A0A368PHJ7_SETIT; Uncharacterized protein
STRINGSi017462m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-09sequence-specific DNA binding transcription factors