PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G048800.1.p

Common Name

SETIT_019936mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 401aa MW: 42202.5 Da PI: 6.2311

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G048800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	299.2	1e-91	32	400	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevs 88 l+l+cA ++ gd a+++ ++ a p+gd+ Rla++f++ALa+r+ + ++ + ++++ + +++a+ +++++ Seita.1G048800.1.p 32 LVLACAGLLHRGDVDGARRAAGEVLSAADPRGDAADRLAHHFARALARRVDGGDDKAGGEEEDATSAPAGaaptvpGAPSATAYLAYNQIA 122 789*********************************************994444432222222221113455568888899999* PP GRAS 89 PilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 P+l+f+hltaNq Il+a++ +r+Hi+D+d+ +G+QWp+Llqa+a+R +RiTg g+ +++ l +tg+rL+ fA++l++pf+ Seita.1G048800.1.p 123 PFLRFAHLTANQVILDAAAATgaRRLHIVDLDAAHGVQWPPLLQAFADR------VRITGAGP----DHDVLLRTGDRLRAFASSLNLPFH 203 ************9876655*********************8......****....******************** PP GRAS 178 fnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerfleale 262 f++l +++l+ L+++p+E+laVn+vl lh+l ++++ ++L+ vks++P vv+++e+ea+ ++ ++ +r++ a++ Seita.1G048800.1.p 204 FHPLplpCTTQLAGDPAAVLELHPDETLAVNCVLFLHKLG-GEGEI----AAFLSWVKSMNPAVVTLAEREASVGRDcpeDLHRRVAAAMD 289 776666777778899****************8.34444....66***************9997755569****** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352 yysa+fd+lea++p+ s +r +vEre+lg+ei +vva a r++ +e+W ++ ++aG++p pls +a++qa+lllr ++ s+gy e Seita.1G048800.1.p 290 YYSAVFDALEATVPPGSADRLSVEREVLGQEIDEVVAPGRAG--GRTRGFESWAAAARAAGLSPRPLSAFAVSQARLLLRLHYpSEGYVAE 378 *********************************99998..9****************************************** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 e +g+ +lgW++rpL+svS+W+ Seita.1G048800.1.p 379 EARGACFLGWQTRPLMSVSSWQ 400 *******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.694	3	379	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-89	32	400	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MLGAPRHDGD AAARARHQEQ DAAAAPSSPR GLVLACAGLL HRGDVDGARR AAGEVLSAAD 60 PRGDAADRLA HHFARALARR VDGGDDKAGG EEEDATSAPA GAAPTVPGAP SATAYLAYNQ 120 IAPFLRFAHL TANQVILDAA AATGARRLHI VDLDAAHGVQ WPPLLQAFAD RVRITGAGPD 180 HDVLLRTGDR LRAFASSLNL PFHFHPLPLP CTTQLAGDPA AVLELHPDET LAVNCVLFLH 240 KLGGEGEIAA FLSWVKSMNP AVVTLAEREA SVGRDCPEDL HRRVAAAMDY YSAVFDALEA 300 TVPPGSADRL SVEREVLGQE IDEVVAPGRA GGRTRGFESW AAAARAAGLS PRPLSAFAVS 360 QARLLLRLHY PSEGYVAEEA RGACFLGWQT RPLMSVSSWQ *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MLGAPRHDGD AAARARHQEQ DAAAAPSSPR GLVLACAGLL HRGDVDGARR AAGEVLSAAD  60
PRGDAADRLA HHFARALARR VDGGDDKAGG EEEDATSAPA GAAPTVPGAP SATAYLAYNQ  120
IAPFLRFAHL TANQVILDAA AATGARRLHI VDLDAAHGVQ WPPLLQAFAD RVRITGAGPD  180
HDVLLRTGDR LRAFASSLNL PFHFHPLPLP CTTQLAGDPA AVLELHPDET LAVNCVLFLH  240
KLGGEGEIAA FLSWVKSMNP AVVTLAEREA SVGRDCPEDL HRRVAAAMDY YSAVFDALEA  300
TVPPGSADRL SVEREVLGQE IDEVVAPGRA GGRTRGFESW AAAARAAGLS PRPLSAFAVS  360
QARLLLRLHY PSEGYVAEEA RGACFLGWQT RPLMSVSSWQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-51	55	400	29	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G048800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806722.1	0.0	protein MONOCULM 1
Swissprot	Q84MM9	1e-137	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A368PHR6	0.0	A0A368PHR6_SETIT; Uncharacterized protein
STRING	Si019936m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-77	GRAS family protein

Link Out ? help Back to Top
Phytozome	Seita.1G048800.1.p

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]