PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G034600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 572aa    MW: 59992.3 Da    PI: 7.7924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G034600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11351394452
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                         +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  Seita.1G034600.1.p 351 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 394
                         78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-16347415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15350416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9351394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-5362401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDTLFVIGQE SRLRILQRAA ARVPGCAYLC AWAALPASQP AAAAAAASSS SPAATRCVPG  60
WAYKDGRAFM ELPANDLTAS ASLPVQQQFY EMAAFMGCES GEIEVGMSTP ASGGSPMSLE  120
SSLHQVFSED FFQQSLLEEL LQLPPTRPSS PSSSLPSVSV GSPAAEGSTS LLRTLPVTPP  180
PVATPSSGPE RQAPAPPLHH PRPPLASPFS RHGGRLHFPS PDADDAAMAE AMLAVISASS  240
SSALPTTHPS TSTAAPPPGN HHHHGARRWP RRRGTTTTAF RAYNAALAPR VPWRPPGAPG  300
QRMIKMGISI LRRMHMLRFS RERTGGATAM AQQAQEEEED TPAAPTSSQL NHMISERRRR  360
ERLNESFEAL RGLLPPGSKK DKATVLAKTL DYMNILVAQI ADLEARNRSL ESRAHQHANG  420
GGGGGGGGWK ERPYYSSSEQ QEVVVLQGLS GGTSERVGQV HVTAASGAAA SASSSSSSAV  480
AGREVTVRVE ARAAHGDVAE LVARALAVIK EMGRFTVVAV DARRPGDGAA AHATFTLRAT  540
AGEFDEASLR EAVMKVAAED SATPAPSDDD S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G034600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3617113e-38AK361711.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1146P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679086.10.0putative transcription factor bHLH041 isoform X2
TrEMBLA0A368PH990.0A0A368PH99_SETIT; Uncharacterized protein
STRINGSi019540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-15bHLH family protein