PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G027200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 228aa    MW: 25100.8 Da    PI: 10.0835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G027200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-175095352
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aar +
  Seita.1G027200.1.p 50 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAARAR 95
                        9****998.**********843...6*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.53349106IPR001471AP2/ERF domain
SMARTSM003802.2E-2149114IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-165096IPR016177DNA-binding domain
PRINTSPR003673.0E-105061IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-245098IPR001471AP2/ERF domain
PfamPF008473.8E-125094IPR001471AP2/ERF domain
CDDcd000186.05E-165084No hitNo description
PRINTSPR003673.0E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MPDTEVSSPA SSGGTSSSPP QSPNEAASKR SASGGGKTRP RDGGEKHLSY RGVRMRAWGK  60
WVSEIREPRK KSRIWLGTFP TPEMAARAHD AARARRQRTR RRAQLPGDGR RAPARPPPHR  120
ETSRRRRRAQ RPWSPPPGWQ QLAPAAGQQQ DEELDAIVEL PRLDDDDDAE FVAFGDTSFV  180
FHASWCDPMW IDDDTGYVPA AAAAHDDLRG LDGDPGWAQP VGALWNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RARRQRTR
2114127RPPPHRETSRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G027200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269409e-92KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660287.15e-61LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 3-like
TrEMBLA0A368PGI21e-159A0A368PGI2_SETIT; Uncharacterized protein
STRINGSi018222m1e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-22ERF family protein