PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G025900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 273aa    MW: 29762.2 Da    PI: 11.9923
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G025900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind29.51.9e-09141182849
                         HHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-- CS
        HSF_DNA-bind   8 eiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsn 49 
                         ++++d++++ +i w + +nsfvv d+  fa+++Lp +Fkhs 
  Seita.1G025900.1.p 141 RMVDDPSTDGVIAWGRANNSFVVADPFVFARTLLPAHFKHST 182
                         69*************999**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-5129221IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-6141182IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-8141181IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-10141182IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MARHRAASSP TPALPAFARR DQVITSVEWR RATRVVVGKG NPEQVTWRVP KKRQQDGRTA  60
CVIASRSQAF SLLAGNEETA SRRRLMLRVR ARTRRVLELA CAAERSLAVL CRTSVGRCGL  120
APVLSLSHAW PGFISPVPDL RMVDDPSTDG VIAWGRANNS FVVADPFVFA RTLLPAHFKH  180
STSPASCASS THTCARVAVE VVRLRREQRA NEEQLVAMRR RVQETERRPR QMLALLARAG  240
GDVDAMAVDG VRGSVPTVSN PSGGSLLLSD RS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G025900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418054e-45BT041805.1 Zea mays full-length cDNA clone ZM_BFb0058D10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368PH540.0A0A368PH54_SETIT; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-12heat shock transcription factor C1