PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G025800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 280aa    MW: 29098.4 Da    PI: 6.1411
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G025800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.93.2e-33171082102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++
  Seita.1G025800.1.p  17 FVAKTYRMVDDPSTDGVIAWGRDNNSFVVADPFVFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTH 98 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll +i r++s
  Seita.1G025800.1.p  99 LLPRIVRRSS 108
                         *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3313106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-5213106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.1E-3713106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.8E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MASGGGAGAD AAGVAPFVAK TYRMVDDPST DGVIAWGRDN NSFVVADPFV FSQTLLPAHF  60
KHSNFSSFVR QLNTYGFRKV DPDRWEFAHV SFLRGQTHLL PRIVRRSSGG GGGKRKDDGC  120
GGGGDAGAVD EDAVAMELVR LKREQRAIED QVAAMWRRVQ ETERRPKQML AFLVKVAGDP  180
QVLRRLVSSS GASGAGGASG GVGFASGPEE DCAGGEVAKR ARLLLDGGDP VYGGGSSDAA  240
AAAEFGGFYS AGADDVGFGG EAGGYLQPPP YVFPVNSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23510817131Heat shock factor protein 1
5d5v_B2e-23510817131Heat shock factor protein 1
5d5v_D2e-23510817131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G025800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766691e-176EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951380.10.0heat stress transcription factor C-2a-like
SwissprotQ6EUG41e-101HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A368PG400.0A0A368PG40_SETIT; Uncharacterized protein
STRINGGRMZM2G105348_P011e-124(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-57heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]