PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G024500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family BES1
Protein Properties Length: 419aa    MW: 41960 Da    PI: 10.3563
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G024500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221389.3e-43541654119
              DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 
                          r+p++ ErEnn+rRERrRR ++++iy+ LRa+Gny lp  +DnneVlkA creAGwvve+DGttyr+gs+p+       g+ a +sp ss
  Seita.1G024500.1.p  54 ARTPSQVERENNRRRERRRRLVSSRIYTALRAEGNYTLPRNCDNNEVLKAVCREAGWVVEPDGTTYRRGSRPPrGVLGGFGATAPVSPASS 144
                         799**********************************************************************333344444444566666 PP

              DUF822  94 lqsslkssalaspvesysaspksssf 119
                         +       + + p++sy  ++ sss+
  Seita.1G024500.1.p 145 TPP-----TPTPPTASYGLTLGSSSS 165
                         552.....233445555555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.0E-4054167IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MNGGGGMVAA GAGGAGGSGG GGGGDRDRGK GIVFGNGYGS ARGRAKGRAR NAPARTPSQV  60
ERENNRRRER RRRLVSSRIY TALRAEGNYT LPRNCDNNEV LKAVCREAGW VVEPDGTTYR  120
RGSRPPRGVL GGFGATAPVS PASSTPPTPT PPTASYGLTL GSSSSSSSYL TLGGGSGGIF  180
YGAAGGGGSS SGLPAWFQRL SQAGGQASSS TTASAPVTPQ NASPPQLTLA RWAAEDNAAA  240
AAAAAAAANL QPRWAAGAGP SRYAPQAQQQ PLTMPPSPVG GGSGAVDPVL LLAGIQISAA  300
ANNNNNYRRP PRPYTYSPLG TPGASSFAAG ASSSRMGTPG PVQSSGGPWA PAPAPAPAPA  360
PAPAPASRGG GDGDGDVEME PREFSFAWDG EVSREDYTDE DGLELTLGNS KTRADRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-1975132392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-1975132392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-1975132392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-1975132392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G024500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012298e-32AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819084.19e-87protein BZR1 homolog 4-like
TrEMBLA0A368PGE70.0A0A368PGE7_SETIT; Uncharacterized protein
STRINGSi019582m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1866659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.62e-22BES1 family protein