PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.1G007300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36241.9 Da PI: 7.224 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 26 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eE e+l++ v + +++W++Iar ++ gR++kqc++rw yl Seita.1G007300.4.p 26 RGAWSQEENEILIQMVDTHSSKDWSSIARAVP-GRSRKQCRDRWTHYL 72 89******************************.***********9886 PP | |||||||
2 | Myb_DNA-binding | 40.7 | 5.4e-13 | 79 | 119 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W+++E+ l++a+k +G++ W a+ ++ gRt+k +k++w Seita.1G007300.4.p 79 MPWSEQEEIDLIRAHKIHGNK-WCELAKFFP-GRTGKAIKNYW 119 68*******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.241 | 21 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-28 | 24 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 25 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 27 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.91E-14 | 28 | 72 | No hit | No description |
Pfam | PF13921 | 4.7E-17 | 29 | 89 | No hit | No description |
SMART | SM00717 | 6.4E-12 | 77 | 125 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.541 | 80 | 127 | IPR017930 | Myb domain |
CDD | cd00167 | 1.20E-11 | 80 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 80 | 127 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MMSPYKLLNI STMKNRKGQT VSFKRRGAWS QEENEILIQM VDTHSSKDWS SIARAVPGRS 60 RKQCRDRWTH YLDPAVNQMP WSEQEEIDLI RAHKIHGNKW CELAKFFPGR TGKAIKNYWT 120 GAMKKKIKSN LGSGSPEQLS PCPNDSLIPV GRDSTATSSQ DSSNNIPISS ADLPVRLKSK 180 HGLTEACRNA CTLKEKGPDS IHDEGSIPHS VNVSQMVDGR TVGSSLRILT EEKLVSPLSS 240 VDEKVSCVAA NSPKPLKEEE STNFLEIPPA LSFQSSNVHS DAICSSADPE SRQLHLASIA 300 DLLDMSYCES LMVIAPDSTN DEDFKLGM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-28 | 26 | 127 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-28 | 26 | 127 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.1G007300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683586.1 | 0.0 | transcription factor MYB3R-1-like isoform X2 | ||||
TrEMBL | A0A368PFE6 | 0.0 | A0A368PFE6_SETIT; Uncharacterized protein | ||||
STRING | Si017987m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.2 | 2e-40 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.1G007300.4.p |