PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G000900.1.p
Common NameSETIT_019050mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 147aa    MW: 15561.5 Da    PI: 9.1108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G000900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-052345123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Seita.1G000900.1.p 23 YPCSFCKREFRSAQALGGHMNVH 45
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-62049No hitNo description
PfamPF139124.4E-72346IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0942350IPR007087Zinc finger, C2H2
SMARTSM003550.0072345IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MERESKQQQP WRTCGFTWPP RSYPCSFCKR EFRSAQALGG HMNVHRRDRA RLRHGLSPPP  60
AAPSRAAAAV IPNLNYPPPQ SHRHRPTTTS SSIMAAVSLE LGVGVVCSCG STSAAATTSA  120
TPVAPAGPEE DDGGLDLELR LGVSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-141845229superman protein
2l1o_A9e-141845229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G000900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954553.11e-103transcriptional regulator SUPERMAN
TrEMBLA0A368PFI61e-102A0A368PFI6_SETIT; Uncharacterized protein
STRINGSi019050m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-22C2H2 family protein