PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676794972

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GRAS

Protein Properties

Length: 634aa MW: 73276 Da PI: 6.13

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676794972	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.1	1.1e-108	255	631	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL++cA+avs+gd++ a l ++++ +sp gd+ qRla++f++AL+arl++s+ + ++ ++ ++ +++ ++ l+a++++ sP++++ ++ + 676794972 255 RTLLTHCAQAVSTGDKTTALDLFFQIRQESSPFGDASQRLAHCFANALEARLQGSTGPVIQTYyNAITSLKETAADILKAYRVYLSSSPFVTLMYFFSFR 354 689*************************************************7777776664777777888*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Ilea++ +e +Hi+Df+i +G+QWp ++q ++ R++ + +lRiTg++ p+ g +e++eetg+rL++++++++vpfe+++++++++e+++++e++++p 676794972 355 MILEAAKDAEVLHIVDFGILYGFQWPMFIQYMSGRTDVAKKLRITGIELPQRGlrPAERIEETGRRLSEYCKRFNVPFEYKAIASQNWETIRINEFDIRP 454 ************************************************9**************************999********** PP GRAS 199 gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 +E+l+Vn l+l++l de++s e +rd+vLkl+++++P+v+v++ + + n++ F rf ea+++ysalfd+++++lpr+++eri Ere+ gre++nv 676794972 455 NEVLVVNAGLRLKNLQDETGSEEMcPRDAVLKLIRKMNPDVFVHAVVNGSFNAPFFISRFKEAVYHYSALFDMFDTTLPRDNQERIRFEREFYGREAMNV 554 ******************9999********************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +ace+a+r+er et+++W+ r+ +aGFk+ p+++++++ ++ l+k + + v+e+s++l++gWk+r+L++ S+W 676794972 555 IACEEADRVERPETYRQWQVRMVRAGFKQKPVKSDIVDLFRAKLKKWRcHKDFVVDENSKWLLQGWKGRTLYASSCW 631 **********************************99999999998899*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.008	228	611	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-106	255	631	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MDPNFEYHDE SLYLNPNLDN SFPSLDFLSD PREDQYSSLQ SDEKDSSNTL LRYVSQILME 60 EGDKQSMFYD SLALRRTEEM LQQVITDSKA SSFTSPESML TSSDASGGSI ESSYRVSQPV 120 NEILVKSMFS DAESDLQFRK GLEEARRFLP NSDQWVINLD RPVTVKEEVG SDHLRVKKKH 180 EREVLDFEET RSFKQSATNV EDGKITDMFD KVLLLDGECD PQTLSENKTE DILSNNKKKQ 240 TKKTKKKKSQ VVDFRTLLTH CAQAVSTGDK TTALDLFFQI RQESSPFGDA SQRLAHCFAN 300 ALEARLQGST GPVIQTYYNA ITSLKETAAD ILKAYRVYLS SSPFVTLMYF FSFRMILEAA 360 KDAEVLHIVD FGILYGFQWP MFIQYMSGRT DVAKKLRITG IELPQRGLRP AERIEETGRR 420 LSEYCKRFNV PFEYKAIASQ NWETIRINEF DIRPNEVLVV NAGLRLKNLQ DETGSEEMCP 480 RDAVLKLIRK MNPDVFVHAV VNGSFNAPFF ISRFKEAVYH YSALFDMFDT TLPRDNQERI 540 RFEREFYGRE AMNVIACEEA DRVERPETYR QWQVRMVRAG FKQKPVKSDI VDLFRAKLKK 600 WRCHKDFVVD ENSKWLLQGW KGRTLYASSC WVPA

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MDPNFEYHDE SLYLNPNLDN SFPSLDFLSD PREDQYSSLQ SDEKDSSNTL LRYVSQILME  60
EGDKQSMFYD SLALRRTEEM LQQVITDSKA SSFTSPESML TSSDASGGSI ESSYRVSQPV  120
NEILVKSMFS DAESDLQFRK GLEEARRFLP NSDQWVINLD RPVTVKEEVG SDHLRVKKKH  180
EREVLDFEET RSFKQSATNV EDGKITDMFD KVLLLDGECD PQTLSENKTE DILSNNKKKQ  240
TKKTKKKKSQ VVDFRTLLTH CAQAVSTGDK TTALDLFFQI RQESSPFGDA SQRLAHCFAN  300
ALEARLQGST GPVIQTYYNA ITSLKETAAD ILKAYRVYLS SSPFVTLMYF FSFRMILEAA  360
KDAEVLHIVD FGILYGFQWP MFIQYMSGRT DVAKKLRITG IELPQRGLRP AERIEETGRR  420
LSEYCKRFNV PFEYKAIASQ NWETIRINEF DIRPNEVLVV NAGLRLKNLQ DETGSEEMCP  480
RDAVLKLIRK MNPDVFVHAV VNGSFNAPFF ISRFKEAVYH YSALFDMFDT TLPRDNQERI  540
RFEREFYGRE AMNVIACEEA DRVERPETYR QWQVRMVRAG FKQKPVKSDI VDLFRAKLKK  600
WRCHKDFVVD ENSKWLLQGW KGRTLYASSC WVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-43	258	631	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676794972

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409948.1	0.0	scarecrow-like protein 34
Swissprot	P0C884	0.0	SCL34_ARATH; Scarecrow-like protein 34
TrEMBL	A0A078HM60	0.0	A0A078HM60_BRANA; BnaC04g15290D protein
STRING	XP_006409948.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	0.0	GRAS family protein