PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676794168

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 356aa MW: 39601 Da PI: 6.451

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676794168	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	264	304	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L 676794168 264 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 304 69****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.123	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.02E-13	260	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.16E-10	261	309	No hit	No description
SMART	SM00353	6.6E-13	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-12	263	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.0E-6	264	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEGLESVYAQ AIYGMTRESK IMERHQGSDL IWGGNELMGR ELCSSSSSSH QLMNPNLSSC 60 FMSDLGVIGE VQHHQHVGNR ATSLDPSSLD CLLSATTNSN NTSTEDDEGI SVLFSDFQTL 120 WSFGGVSSAE SENREITTET ITKSKSLKRN RGDGDETGSH FRLVHHPQDD SEKGDFKLIY 180 DENQTKSKKA RTEKERGGGS SNISFQHSTS LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF 240 GLETVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT LVPGGTKMDT ASMLDEAANY 300 LKFLRSQVKA LENLRPKLDP TTNLSFSSPS SSSFPLFHPS FLPFQNPNQI HHHPEC

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEGLESVYAQ AIYGMTRESK IMERHQGSDL IWGGNELMGR ELCSSSSSSH QLMNPNLSSC  60
FMSDLGVIGE VQHHQHVGNR ATSLDPSSLD CLLSATTNSN NTSTEDDEGI SVLFSDFQTL  120
WSFGGVSSAE SENREITTET ITKSKSLKRN RGDGDETGSH FRLVHHPQDD SEKGDFKLIY  180
DENQTKSKKA RTEKERGGGS SNISFQHSTS LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF  240
GLETVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT LVPGGTKMDT ASMLDEAANY  300
LKFLRSQVKA LENLRPKLDP TTNLSFSSPS SSSFPLFHPS FLPFQNPNQI HHHPEC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	269	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676794168

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406283.1	0.0	transcription factor bHLH87
Swissprot	Q8S3D2	0.0	BH087_ARATH; Transcription factor bHLH87
TrEMBL	V4NMP9	0.0	V4NMP9_EUTSA; Uncharacterized protein
STRING	XP_006406283.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]