PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676793418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Dof | ||||||||
Protein Properties | Length: 450aa MW: 49940.5 Da PI: 7.6678 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.1 | 1.1e-39 | 108 | 168 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss 676793418 108 PTKILPCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 168 67899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-31 | 105 | 165 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.1E-32 | 110 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.649 | 112 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 114 | 150 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MMMETRDPAI KLFGMKIPFP AVFESTVTVE EEEDEYSCGG DDKSADKLTT EKVTPELSEN 60 KKSNCNNSKP EKEETTSTEQ LESNDSPEDD NDNNNDQQTT DGKTLKKPTK ILPCPRCKSM 120 DTKFCYYNNY NINQPRHFCK ACQRYWTAGG TMRNVPVGAG RRKNKSSSSH YRHITISEAL 180 EAARLDPGLQ ANTRVLSFGL EAHQQHAAPI TPVMKLQGDQ KVTNGARNGF HGLADQRVMA 240 RVENGDDCSS GSSVTTSNNH SVDETRPQSC RVVEPQMNNN NNNMNGYACI PGVPWPYTWN 300 PSMPPPGFYP PPGYPMPFYP YWTIPMLSPN QTSSPMSQKG SSPNSPILGK HSRDEESSRK 360 DNEPERKQRN GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN EGSTLGSKGG MFKGFDQKTK 420 KSNNDKADNS PLLSANPAAL SRSLNFHERS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676793418 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877565.1 | 0.0 | cyclic dof factor 3 | ||||
Swissprot | Q8LFV3 | 0.0 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | D7LNE3 | 0.0 | D7LNE3_ARALL; Predicted protein | ||||
STRING | Bostr.18473s0221.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5441 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 0.0 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
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