PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676793418
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 450aa    MW: 49940.5 Da    PI: 7.6678
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676793418genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-39108168262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss
  676793418 108 PTKILPCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 168
                67899*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-31105165IPR003851Zinc finger, Dof-type
PfamPF027015.1E-32110166IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.649112166IPR003851Zinc finger, Dof-type
PROSITE patternPS013610114150IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MMMETRDPAI KLFGMKIPFP AVFESTVTVE EEEDEYSCGG DDKSADKLTT EKVTPELSEN  60
KKSNCNNSKP EKEETTSTEQ LESNDSPEDD NDNNNDQQTT DGKTLKKPTK ILPCPRCKSM  120
DTKFCYYNNY NINQPRHFCK ACQRYWTAGG TMRNVPVGAG RRKNKSSSSH YRHITISEAL  180
EAARLDPGLQ ANTRVLSFGL EAHQQHAAPI TPVMKLQGDQ KVTNGARNGF HGLADQRVMA  240
RVENGDDCSS GSSVTTSNNH SVDETRPQSC RVVEPQMNNN NNNMNGYACI PGVPWPYTWN  300
PSMPPPGFYP PPGYPMPFYP YWTIPMLSPN QTSSPMSQKG SSPNSPILGK HSRDEESSRK  360
DNEPERKQRN GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN EGSTLGSKGG MFKGFDQKTK  420
KSNNDKADNS PLLSANPAAL SRSLNFHERS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00394DAPTransfer from AT3G47500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676793418
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877565.10.0cyclic dof factor 3
SwissprotQ8LFV30.0CDF3_ARATH; Cyclic dof factor 3
TrEMBLD7LNE30.0D7LNE3_ARALL; Predicted protein
STRINGBostr.18473s0221.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54412848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.10.0cycling DOF factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  4. Renau-Morata B, et al.
    Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions.
    Front Plant Sci, 2017. 8: p. 660
    [PMID:28515731]
  5. Henriques R, et al.
    The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
    New Phytol., 2017. 216(3): p. 854-867
    [PMID:28758689]