PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676792908
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family BES1
Protein Properties Length: 681aa    MW: 76179.2 Da    PI: 6.2446
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676792908genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822160.89e-50792281145
     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslk 99 
                gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ + +    +++++ ++s+es+l+ s+lk
  676792908  79 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQTN----HVVQFPTRSIESPLSsSTLK 174
                6899******************************************************************999888....999**********99999** PP

     DUF822 100 ssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145
                ++a+a+   ++++ ++ ++ +sp+slds+ +a++        ++ +p++sv + 
  676792908 175 NCAKAALDCHQHPALRIDDNLSPVSLDSVVIAESdhpgngryTNASPITSVGCV 228
                *******************************99999999999888999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.4E-4680225IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.56E-152247662IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.1E-163250661IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.3E-80255645IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53286300IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53307325IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53329350IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53422444IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53495514IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53529545IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53546557IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53564587IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-53602624IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MHTLNNNTTI TGSQDPIDPN RNLDPDQYPH RNQNHPQSRR PRGFAVVAAA ASMGPAESDV  60
NNGNIGGETS SGGGGGGGGG KGKREREKEK ERTKLRERHR RAITSRMLAG LRQYGNFPLP  120
ARADMNDVIA ALAREAGWSV DADGTTYRQS HQTNHVVQFP TRSIESPLSS STLKNCAKAA  180
LDCHQHPALR IDDNLSPVSL DSVVIAESDH PGNGRYTNAS PITSVGCVEA NQLIQDVHST  240
EPRNDFTESF YVPVYAMLPV GTIDNFGQLV DPQGLRQELS CMKSLNVDGV VIDCWWGIVE  300
GWNPQKYVWS GYRELFNLIR DFKLKLQVVM AFHEYGGNAS GNVMISLPQW VLEIGKENPD  360
IFFTDREGRR SFECLNWSID KERVLHGRTG IEVYFDFMRS FRSEFDDLFA EGLIDAIEIG  420
LGASGELKFP AFPERMGWVY PGIGEFQCYD KYSQSNLLKE AKSRGFAFWG KGPENAGQYN  480
SQPHETGFFQ ERGEYDSYFG RFFLNWYSQL LIGHAENVLS LASLAFEETK IIVKIPAIYW  540
SYKTASHAAE LTAGYYNPSN RDGYSLVFET LKKYSVTVKF VCPGPQMSPN EHEAALADPE  600
GLSWQVVNAA WDKGLLIGGE NAITCFDREG CLRLIEMAKP RNHPDSYHFS FFTYRQPSPL  660
VTYRDRKVSG NQTRAIEVGG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11325164111401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676792908
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613838.10.0PREDICTED: beta-amylase 8
RefseqXP_022559539.10.0beta-amylase 8-like isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0D3AUA10.0A0A0D3AUA1_BRAOL; Beta-amylase
STRINGBo2g127050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]