PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676792602
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 285aa    MW: 32405.6 Da    PI: 5.1561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676792602genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1987138155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  676792602  87 KKYRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFHTAEEAAMAYDKAAVRIRG 138
                59********.**********44465..**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-2887147No hitNo description
SMARTSM003803.9E-3588153IPR001471AP2/ERF domain
PfamPF008476.8E-1288138IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2088148IPR016177DNA-binding domain
PROSITE profilePS5103222.49788147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-2988147IPR001471AP2/ERF domain
PRINTSPR003679.9E-1189100IPR001471AP2/ERF domain
PRINTSPR003679.9E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAFGNIQEPD GEILKNVWAN FIRKPATDKR SVHVPEVSTT WEALPTLDDI PSLDMSIESK  60
EWTEILDALT KPTGSCSLSS PVSCKTKKYR GVRRRPWGKY AAEIRDSTRN GVRVWLGTFH  120
TAEEAAMAYD KAAVRIRGIQ RAHTNFQLET VIKAMEMDCR PSYYPINRSS TSQPLRNHRE  180
IGTGKEAIMD YDNKVVDGVV ENSYALRYCS TQECLEICGS LGNEETWLGS RKRQRRDGDC  240
MFQEVRETDE MKKMADGEEK LCDVLGLFEF EDLGSDYLDT LLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2485148264ATERF1
3gcc_A3e-2485148264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676792602
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670492.11e-162ethylene-responsive transcription factor ERF091-like
SwissprotO495151e-144ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A398AK231e-161A0A398AK23_BRACM; Uncharacterized protein
STRINGBra013310.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-136ERF family protein