PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676792520
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 794aa    MW: 90650.6 Da    PI: 7.1103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676792520genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-15459503146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r  WT+eEd++l  av ++G ++W ++a+ +g gRt+ qc +rw+k
        676792520 459 RREWTPEEDDQLRTAVGLFGEKDWQSVANVIG-GRTGTQCSNRWNK 503
                      678*****************************.************8 PP
2Myb_DNA-binding42.31.8e-13518561246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++W+ eEd++l+ a + +G+++ ++Ia+ ++ gRt  qc+ rw +
        676792520 518 DKWSSEEDKRLKVALTFFGPKNYHKIAQFVP-GRTQSQCRTRWKD 561
                      69*****************************.***********75 PP
3Myb_DNA-binding445e-14570614247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+WT+eE  ++ +avk++G  +W+++a+++   Rt kqc  rw k+
        676792520 570 GKWTEEEITKFNEAVKEHGDSNWAKVAAHVY-SRTSKQCSRRWEKL 614
                      79****************************9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.7311402IPR001005SANT/Myb domain
PROSITE profilePS500904.646312400IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-5315330IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-5376412IPR009057Homeodomain-like
SuperFamilySSF466891.08E-12384451IPR009057Homeodomain-like
PROSITE profilePS500907.817401453IPR017877Myb-like domain
SMARTSM007175.6E-5405455IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-10413462IPR009057Homeodomain-like
SuperFamilySSF466893.01E-19438505IPR009057Homeodomain-like
PROSITE profilePS5129421.94454509IPR017930Myb domain
SMARTSM007172.4E-14458507IPR001005SANT/Myb domain
PfamPF002493.0E-14459503IPR001005SANT/Myb domain
CDDcd001674.28E-12461505No hitNo description
Gene3DG3DSA:1.10.10.604.2E-16463511IPR009057Homeodomain-like
PROSITE profilePS5129410.311511563IPR017930Myb domain
SMARTSM007172.0E-10516565IPR001005SANT/Myb domain
PfamPF002492.4E-11518561IPR001005SANT/Myb domain
CDDcd001672.14E-9519560No hitNo description
Gene3DG3DSA:1.10.10.603.2E-16519570IPR009057Homeodomain-like
SuperFamilySSF466895.75E-20543617IPR009057Homeodomain-like
PROSITE profilePS5129416.522564619IPR017930Myb domain
SMARTSM007171.6E-10568617IPR001005SANT/Myb domain
PfamPF002493.1E-13570614IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-13571620IPR009057Homeodomain-like
CDDcd001671.01E-10571614No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MNRESLYESD GDDNNDDIGE DLEDLRRAFT ISEANSASVG SDDGGSGGGM PSDCEEDFEM  60
LRSIKSELPS STDPPMGLYI SSVPLDSESE DDFEMLRSIK RQLAFLIEEE EEDGAFEETL  120
QAICKRFSSY ETSGSFMNDL ENKQVHASLN ETSKDILSRS NTCESFSEEV EAGYVHENTF  180
IEPLAPPSSS SNFPESAKAF VDAIRMNRSY KKLLQRKMGE IEVKIKKNEE LQRNVKIIRD  240
FTASCKRRIK KQAISQSKDP RFELISTRKP QTYDSSEGND KKTSPLTLGP PENPCVASYR  300
MALEEYPVSV CRTNWSVKEN KNLAKGLKQQ LQETLVREAT ERSSDLEGCT SDINTILESI  360
RDLEITPEMI RQFLPKVNWD QLDIKNRSAE ECEARWMSSE DPLINHGPWT AAEDDYLRLI  420
TQKKSFTDWL DISVSLGTNR TPFQCLARYQ RSLNADILRR EWTPEEDDQL RTAVGLFGEK  480
DWQSVANVIG GRTGTQCSNR WNKSLLPSRK RVGKSRSDKW SSEEDKRLKV ALTFFGPKNY  540
HKIAQFVPGR TQSQCRTRWK DSLDARLSFG KWTEEEITKF NEAVKEHGDS NWAKVAAHVY  600
SRTSKQCSRR WEKLNPHLKQ LKKEALRLRR EATVGNFVDR ESERPHLVAS DFLALAVRSL  660
EQEPVLKKKR KARQKKADVE CGSEAVGADT ERQPKRRRRK GLEKCSGDVC RQENETEDSV  720
KEKKQKRKRK AVEGTSSNNS TVTTNCPQVN IGIKKIMPRR KVSVLIPVEN QDISNQFLFP  780
EYFAGSSTNF IEKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-213686204155MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-213686204155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1694699KRRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676792520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550321.10.0snRNA-activating protein complex subunit 4-like
TrEMBLA0A3P5ZJT70.0A0A3P5ZJT7_BRACM; Uncharacterized protein
STRINGBra013415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1