PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676792476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HSF | ||||||||
Protein Properties | Length: 154aa MW: 18149.9 Da PI: 9.6013 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 51.9 | 2e-16 | 20 | 105 | 6 | 101 |
HHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 6 lyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 lyei++ ++++ +isws+ng+sf+v+dee f ++ + F +++f+ F L++ gFkkv++e+ e++h++F +gk el +++ +++ 676792476 20 LYEIVDRPSTDPIISWSQNGKSFIVWDEEAFCRNF-IHKFHQTKFHFFAYRLKVAGFKKVDSEH---------LEYAHDEFVRGKPELADEMDKRR 105 8********************************55.56799********************999.........78*************99998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.8E-14 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.0E-19 | 19 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.1E-16 | 20 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.55E-16 | 20 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MVRLHGEHGS KARHYLAGIL YEIVDRPSTD PIISWSQNGK SFIVWDEEAF CRNFIHKFHQ 60 TKFHFFAYRL KVAGFKKVDS EHLEYAHDEF VRGKPELADE MDKRRMEFYD AKLKTFMATA 120 PTPPAELRKA FKLAMMEKRE REKAVAKDIT QLNL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676792476 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Bostr.30275s0431.1.p | 2e-42 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18870.1 | 7e-25 | HSF family protein |