PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676792466

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 1067aa MW: 121790 Da PI: 7.3002

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676792466	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.3	1.6e-14	8	97	2	92
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +k lt +dv++++rlv+ + + + g +++ l++ede+ + W +k+ + s+++v+t+GW+++v++ +L +gDf+ F++++++ +l 676792466 8 EKCLTANDVGNLNRLVIHADKYSPFgalLGATTR--PLSFEDEDCKLWMFKC--SYVSQSFVFTEGWRSYVREMQLAAGDFIFFQRHRTDICRL 97 6999**********877776666987334445..5***********..888999***********************766544444 PP
2	HLH	23.4	1e-07	1005	1044	12	55
HHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 RR+ri ++ +L+e++P++ + K s a++Le A +YIk+L+ 676792466 1005 RRRRISMSLKKLQEVVPNL----D-KlTSYADMLESAADYIKDLE 1044 9***************9....4.55*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-18	2	107	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.12E-14	5	105	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.97E-11	6	103	No hit	No description
PROSITE profile	PS50863	10.066	7	103	IPR003340	B3 DNA binding domain
SMART	SM01019	8.0E-4	7	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-12	8	99	IPR003340	B3 DNA binding domain
SMART	SM00255	0.005	164	293	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	4.4E-17	168	322	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52200	3.01E-11	169	291	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	2.74E-42	309	576	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	1.1E-6	345	483	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	2.5E-17	346	580	IPR002182	NB-ARC
PRINTS	PR00364	2.2E-21	350	365	No hit	No description
PRINTS	PR00364	2.2E-21	426	440	No hit	No description
PRINTS	PR00364	2.2E-21	517	531	No hit	No description
SuperFamily	SSF46785	1.12E-7	554	656	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:3.40.50.300	6.5E-4	604	639	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52058	3.23E-36	675	923	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	2.5E-28	684	924	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	6.5E-10	740	759	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	2.2E-21	829	845	No hit	No description
PROSITE profile	PS50888	9.489	993	1043	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0027	1002	1049	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.33E-6	1005	1046	No hit	No description
SuperFamily	SSF47459	1.19E-8	1005	1056	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-5	1005	1044	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-8	1006	1062	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0003677	Molecular Function	DNA binding
GO:0043531	Molecular Function	ADP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1067 aa Download sequence Send to blast
MDKETLLEKC LTANDVGNLN RLVIHADKYS PFGALLGATT RPLSFEDEDC KLWMFKCSYV 60 SQSFVFTEGW RSYVREMQLA AGDFIFFQRH RTDICRLFIS CRRCDDGDAA LGPPDYFLQD 120 PTSIATSSEA LELREKPEEV ETPLQLRLPE HSVTEFAPIL VISCGDNQDS EETYFISYIV 180 GELCLRGFTP FIYDITRSTV TGNQVFPYRS QTCIMIFSMN YARTREFLDK FVAIMDYVEA 240 NNLALLPVFF NVSLSDVRSQ SGSFEKAFTL LENSVQAAHA LRWRAAMIKL ISINSYQYMK 300 GDEVMLAKNI VRDVCLLLSP ETKRNLQGMR SQLRSILSLL NCFQSSSPHI VGLWGMAGIG 360 KTTITREIFR TQAERYDMCY FLPDFHLMCQ IKGLSRLREE FFSKIFGAEK DFIDACDIKL 420 SFTRDRFLGK KVLIVLDGVS NARDAEVLVG GFGWFSGGHT IIVTSRNRQV LVQCNAKEIY 480 EIQKLSELES FQVCCQFATE DIWMGRTPLI LELVSYASGN PLALRVLGLS IQKQCINDEK 540 QNLRKLRQHP PITIQDAFRS SFNGLEDNEK NIFLDLACFF RGDDKDRVGN ILDGCGLFTD 600 LGIYALIDES LISLVDNMIE MPNIYQDAGR YVVCQENNEA GKRSRLWDFS DIFDVLTNNS 660 GTEAIEGIYL DASDLTFDLS STVFERMYRL RLLKLQCLTS ENHCKVCLPQ GLHSLPDELR 720 LLHWERYPLG SLPQTFNPKN LVELNMPYSN LTKLWKGTKN LEKLKRIILS HSRQLTKFPR 780 LSKARNLEHI DLEGCTSLVK VNSSIHHHHK LTFLSLKDCS HLQVMPTMVH LESLEVLNLS 840 GCSELEDLQY FSPNLKELYL AGTAIRKMPS SLEDLTRLVT LDLENCNRLQ HLPPGINNLK 900 TMVTLKLSGC SNLKSFPILD ALCLSDPERL NTKITIKEFV PFEHAIKESR LPGAKFRSES 960 EIAFVFRFPT GKGLSYLQLT SVKKSSTLAS SYFLTYTFVT CQVMRRRRIS MSLKKLQEVV 1020 PNLDKLTSYA DMLESAADYI KDLERQHKNL KEKRANCKCI NKEKKAI

Sequence ? help Back to Top

Protein Sequence Length: 1067 aa Download sequence Send to blast

MDKETLLEKC LTANDVGNLN RLVIHADKYS PFGALLGATT RPLSFEDEDC KLWMFKCSYV  60
SQSFVFTEGW RSYVREMQLA AGDFIFFQRH RTDICRLFIS CRRCDDGDAA LGPPDYFLQD  120
PTSIATSSEA LELREKPEEV ETPLQLRLPE HSVTEFAPIL VISCGDNQDS EETYFISYIV  180
GELCLRGFTP FIYDITRSTV TGNQVFPYRS QTCIMIFSMN YARTREFLDK FVAIMDYVEA  240
NNLALLPVFF NVSLSDVRSQ SGSFEKAFTL LENSVQAAHA LRWRAAMIKL ISINSYQYMK  300
GDEVMLAKNI VRDVCLLLSP ETKRNLQGMR SQLRSILSLL NCFQSSSPHI VGLWGMAGIG  360
KTTITREIFR TQAERYDMCY FLPDFHLMCQ IKGLSRLREE FFSKIFGAEK DFIDACDIKL  420
SFTRDRFLGK KVLIVLDGVS NARDAEVLVG GFGWFSGGHT IIVTSRNRQV LVQCNAKEIY  480
EIQKLSELES FQVCCQFATE DIWMGRTPLI LELVSYASGN PLALRVLGLS IQKQCINDEK  540
QNLRKLRQHP PITIQDAFRS SFNGLEDNEK NIFLDLACFF RGDDKDRVGN ILDGCGLFTD  600
LGIYALIDES LISLVDNMIE MPNIYQDAGR YVVCQENNEA GKRSRLWDFS DIFDVLTNNS  660
GTEAIEGIYL DASDLTFDLS STVFERMYRL RLLKLQCLTS ENHCKVCLPQ GLHSLPDELR  720
LLHWERYPLG SLPQTFNPKN LVELNMPYSN LTKLWKGTKN LEKLKRIILS HSRQLTKFPR  780
LSKARNLEHI DLEGCTSLVK VNSSIHHHHK LTFLSLKDCS HLQVMPTMVH LESLEVLNLS  840
GCSELEDLQY FSPNLKELYL AGTAIRKMPS SLEDLTRLVT LDLENCNRLQ HLPPGINNLK  900
TMVTLKLSGC SNLKSFPILD ALCLSDPERL NTKITIKEFV PFEHAIKESR LPGAKFRSES  960
EIAFVFRFPT GKGLSYLQLT SVKKSSTLAS SYFLTYTFVT CQVMRRRRIS MSLKKLQEVV  1020
PNLDKLTSYA DMLESAADYI KDLERQHKNL KEKRANCKCI NKEKKAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-17	2	103	3	112	B3 domain-containing transcription factor NGA1
5os9_B	4e-17	2	103	3	112	B3 domain-containing transcription factor NGA1
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Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676792466

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597391.1	0.0	PREDICTED: disease resistance protein RRS1-like isoform X2
Swissprot	F4JT78	0.0	RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBL	A0A1J3HY47	0.0	A0A1J3HY47_NOCCA; Putative WRKY transcription factor 19
STRING	Bo1g021600.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5462	9	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-168	WRKY family protein

Publications ? help Back to Top
Meyers BC,Morgante M,Michelmore RW TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J., 2002. 32(1): p. 77-92 [PMID:12366802] Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Kempema LA,Cui X,Holzer FM,Walling LL Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol., 2007. 143(2): p. 849-65 [PMID:17189325]