PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676791942 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ARR-B | ||||||||
Protein Properties | Length: 597aa MW: 66088 Da PI: 6.5562 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.5 | 2.5e-27 | 194 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt eLH++Fv av+qL G ekA Pk+il+lm+v+ Lt+e+v+SHLQk+Rl 676791942 194 KPRVVWTVELHKKFVAAVNQL-GFEKAMPKKILDLMNVEKLTRENVASHLQKFRL 247 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 84.4 | 3.5e-28 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+++ +++l+++l + +y +v+++ ++++alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + + Ga 676791942 19 VLAVDDDQTCLRILESLLHRCQY-HVTTTNQAQKALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVTHGAC 113 799********************.***************888888*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + 676791942 114 DYLLKPVRIEELKN 127 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.0E-174 | 1 | 597 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.99E-35 | 16 | 136 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-42 | 16 | 140 | No hit | No description |
SMART | SM00448 | 4.6E-33 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.285 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.1E-25 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.94E-28 | 20 | 132 | No hit | No description |
PROSITE profile | PS51294 | 11.056 | 191 | 250 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-29 | 191 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-19 | 192 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 194 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-7 | 196 | 245 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MTVEQDFVGL DQFPVGMRVL AVDDDQTCLR ILESLLHRCQ YHVTTTNQAQ KALELLRENK 60 NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD PKYVMKGVTH GACDYLLKPV 120 RIEELKNIWQ HVVRSRFDKN RGSNNGDKRD GSGNEGVANS DQNNGRANRK RKDQYNEDEE 180 EEREDNDDPS SQKKPRVVWT VELHKKFVAA VNQLGFEKAM PKKILDLMNV EKLTRENVAS 240 HLQKFRLYLK RISGNQQAIM ANSDLHFLQM NNGLDGFHHR PIPVGTGQFH GGAAAAGMRP 300 FPPNGILGRL NTPSGIGVRS LSSPSSGMFL QNPTDLGKFH HVSSLPLNHS DGGNILQGLP 360 MPLEFDQLQT NNNMRNMNNN SKSITGNSMS FPSFPTQQSS LPNLVLEGHP QVSPSAFPGH 420 QIKKRLEHWP NAVSSSSSLP PAQTSNSIRH QFDASQLPHS KSDSLEWNTQ NGSSSYSIPF 480 CDSTTPLIPA LDTNPRAFYR STEFDSNANA QPGEVFYDSL QMRQSGNYGP TTDAMLNSNT 540 KEGFIVGQQK LQSGFMGAEA GSLDDIVNST MKQEQSQGDL SGGDLGYGGF SSLRTCI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-27 | 190 | 253 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676791942 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002685 | 1e-116 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013743930.1 | 0.0 | two-component response regulator ARR12-like isoform X1 | ||||
Refseq | XP_013743931.1 | 0.0 | two-component response regulator ARR12-like isoform X2 | ||||
Swissprot | P62598 | 0.0 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | A0A078HC85 | 0.0 | A0A078HC85_BRANA; Two-component response regulator | ||||
TrEMBL | A0A3P6CIE1 | 0.0 | A0A3P6CIE1_BRACM; Two-component response regulator | ||||
STRING | Bra032035.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 0.0 | response regulator 12 |